| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,060 | +C | 7.8% | intergenic (+108/‑134) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,060 | 1 | .→C | 7.8% | 23.7 0.0 ‑1.3 | 116 | intergenic (+108/‑134) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (5/4): ref base (57/50): total (62/54) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.51e-02 | ||||||||||
Only 100 of 126 total aligned reads displayed.
CGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAG > NC_014034/2493960‑2494151
|
cgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGc < 1:4123983/101‑1 (MQ=255)
tGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGCA.TGGC..G.aa > 1:123812/1‑100 (MQ=255)
tGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..G.aa > 1:3321008/1‑100 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aag > 1:301015/1‑99 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aag < 2:4031543/101‑3 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATCCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGGC.TGGC..G.aagcc > 2:2595949/1‑97 (MQ=18)
cccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagc < 2:1014895/101‑4 (MQ=255)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..G.aagcca > 1:3490525/1‑96 (MQ=18)
cccgtCCGCAATCTGACTCCCCCCGTGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccag < 1:713144/97‑7 (MQ=18)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccag < 1:1478641/97‑7 (MQ=255)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccag < 1:2631089/97‑7 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccaga > 2:3182049/4‑94 (MQ=255)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagagg > 2:1266907/2‑92 (MQ=255)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagagg < 2:4026053/100‑10 (MQ=255)
caGCGGTCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCa < 2:1690685/100‑1 (MQ=18)
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCa < 1:1217599/101‑1 (MQ=18)
aGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCag < 2:1980703/101‑2 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcg > 1:262851/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 2:4233939/1‑97 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGAGGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCaccgc > 1:1861491/1‑97 (MQ=17)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc > 2:3495375/1‑101 (MQ=17)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cccc > 2:231394/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cccc < 1:2553565/101‑1 (MQ=17)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cccc < 2:1471921/101‑1 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccccc > 2:321368/1‑101 (MQ=18)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.ccccc > 2:633975/1‑101 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cccccct > 2:3155734/1‑99 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cccccct < 1:4113550/101‑3 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.acccccg > 2:2285455/1‑99 (MQ=17)
cccGGGATAGTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cccccctgc < 2:2113354/101‑5 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGA..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGccc < 1:3748899/101‑1 (MQ=17)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGcccc < 2:3008822/101‑1 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcg > 1:176553/1‑101 (MQ=2)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCcg > 1:1411281/1‑101 (MQ=17)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCcg < 2:1524554/101‑1 (MQ=17)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgc > 1:286327/1‑100 (MQ=2)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgc < 1:76569/101‑2 (MQ=0)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCcgg > 2:3035939/1‑101 (MQ=18)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgcc > 1:1063102/1‑99 (MQ=2)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgcc < 1:2038261/101‑3 (MQ=2)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCcggc > 2:2615727/1‑101 (MQ=18)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.CGCGCCCCCCCGCCCcggc > 1:1983187/1‑101 (MQ=14)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCcggcgg > 2:3916301/1‑101 (MQ=18)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCcggcgg > 1:3984679/1‑101 (MQ=17)
ttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgccggat < 1:582313/101‑3 (MQ=2)
ttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CCCCCTGCCCcgccggat < 2:3744366/101‑3 (MQ=2)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCg < 1:3695775/101‑1 (MQ=17)
agcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTg < 2:1717607/101‑1 (MQ=17)
agcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATAGCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTg < 1:181884/101‑1 (MQ=17)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTgg < 2:1059460/101‑1 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGGCCGTggg > 1:143678/1‑100 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTggcgg < 1:2538613/101‑1 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTggcgg > 2:625069/1‑101 (MQ=18)
aTGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCAGCTC.CCCCCTGCCCCGGCGGTCCGTGgcggcg > 1:2845295/1‑101 (MQ=18)
aTGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGgcggcg < 1:3195103/101‑1 (MQ=17)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGGGGCGcc > 2:1265273/1‑101 (MQ=17)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TAGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGcc > 1:335947/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGGGCCt > 2:911065/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCt < 1:3680930/101‑1 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGGCCGGGGCGGCGGCt > 1:2207444/1‑101 (MQ=9)
aCCGGATGCCTTCCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCAGGCCGTGGGGGGGCCTTg > 1:932663/1‑101 (MQ=9)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGCAGGGC.CCCCCTGCCCCGGCGGGCCGCGGCGGCGCCCTGAc > 1:3622924/1‑101 (MQ=17)
gATGTCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCGGAGGGGGGCAGGGC.CCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc.gg < 2:1353657/101‑1 (MQ=18)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc.ggg < 1:4122895/101‑1 (MQ=17)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc.gggc > 2:517161/1‑101 (MQ=17)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc.gggc < 2:1784540/101‑1 (MQ=17)
gCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc.gggcg < 2:2046365/101‑1 (MQ=17)
ccTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc.gggcgg < 1:1165216/101‑1 (MQ=17)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc.gggcggg > 2:3396601/1‑101 (MQ=18)
tttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCAGGGG.CCCCCTGCCCCGGCGGTCCGTGGCGGCGCTGTGAC.GGGCgggg > 2:3060860/1‑101 (MQ=18)
tttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCgggg > 2:3468148/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGCGGCGGCGCCTTGAC.GGGCggggc > 2:3271940/1‑100 (MQ=17)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGgc > 2:1293961/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCgg > 2:2713873/1‑101 (MQ=18)
ttGCCAGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGGCTTGAC.GGGCGGGGGGGCggg > 1:43816/1‑101 (MQ=17)
tGCCCGAAATATGCGGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGc < 2:2602539/101‑1 (MQ=18)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGc < 1:734103/101‑1 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGAC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCAt > 2:65134/1‑101 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCAtt < 1:321413/101‑1 (MQ=18)
cGAAATTTCCCGGGGGGGTAA.TGGC..G.AA.GCCAGGGGGGGGCAGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCACTa < 1:2414389/101‑1 (MQ=16)
cGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTa < 2:2982465/101‑1 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTaa < 2:3159051/101‑1 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTaa < 1:2176365/101‑1 (MQ=18)
aagtgtCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAAc < 1:3190945/96‑1 (MQ=18)
tatCCGGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGa < 2:1519688/101‑1 (MQ=21)
tatCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGa > 2:1783617/1‑101 (MQ=21)
atCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGG.GAGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTCGAC.GGGGGGGGGCGCGGGCAGTAACCCaa > 1:640583/1‑101 (MQ=12)
tCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGaaa > 2:2713553/1‑101 (MQ=21)
tCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGaaa > 1:1570566/1‑101 (MQ=21)
cccGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGAAAt < 2:2775235/101‑1 (MQ=21)
cGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGAAATTg > 2:1127724/1‑101 (MQ=25)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:1912598/1‑101 (MQ=25)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGAAATTGc < 1:4170531/101‑1 (MQ=25)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGAGGTCCGAGGGGGGGCCTTGACTGGGCGGGGG.GCGGGCGTTAACGGaagtggc > 1:1608576/1‑96 (MQ=2)
ggggggCGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCCTTAACCGAAATTGc > 2:1282704/1‑101 (MQ=21)
gggggTGAA.AGGC..GAAG.CCAGAGGGGGGCAGCCC.CCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTTACCGAAATTGCa < 1:2285623/101‑1 (MQ=25)
ggggTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGAAATTGCaa > 1:3179071/1‑101 (MQ=25)
ggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGAAATTGCaa > 2:832539/1‑101 (MQ=25)
gggTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc > 1:1611537/1‑101 (MQ=25)
gTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCGCCCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAg > 1:592488/1‑101 (MQ=25)
|
CGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CCCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAC.GGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAG > NC_014034/2493960‑2494151
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|