Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_014034 | 2,995,659 | +A | 4.8% | intergenic (+199/+21) | RCAP_rcc02802 → / ← RCAP_rcc02803 | membrane dipeptidase/hypothetical protein |
Read alignment evidence... | ||||||||||
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seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | NC_014034 | 2,995,659 | 2 | .→A | 4.8% | 5.8 0.0 ‑0.5 | 63 | intergenic (+199/+21) | RCAP_rcc02802/RCAP_rcc02803 | membrane dipeptidase/hypothetical protein |
Reads supporting (aligned to +/- strand): new base (3/0): ref base (52/8): total (55/8) | ||||||||||
Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 3.14e-01 |
GCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTGGCGAATT > NC_014034/2995568‑2995759
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gCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCCGGGCg > 1:94853/1‑101 (MQ=255)
cAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCggggggg > 1:4006701/1‑98 (MQ=255)
aaCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGaa > 1:3498010/1‑101 (MQ=255)
gTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATccc > 1:3112198/1‑101 (MQ=255)
cggcggCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGGAATccccc > 2:1978130/1‑101 (MQ=255)
gcgcCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTccc > 2:432538/1‑101 (MQ=255)
ttgtttttCCTTGGAAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttc > 2:1285997/5‑98 (MQ=0)
ttttCCTTGGAAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatct > 2:4195359/1‑94 (MQ=2)
ttCCTTGGAAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatcttg > 1:3319971/1‑92 (MQ=0)
tCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGa > 1:1538854/1‑101 (MQ=255)
ttGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCt > 1:3327980/1‑101 (MQ=255)
aaaatcccgcGGGGGGTTGGGGGGGCGGCCCCCCCCG.GGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAAc < 2:2242409/92‑1 (MQ=255)
gggggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..TCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGCCAGAcg > 1:3500114/1‑101 (MQ=255)
gggggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCCCAGTCCCACAGACTTTCGACCCCGAACCCGGGCCGAcg > 1:2880052/1‑101 (MQ=37)
gggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcgcg > 2:3208128/1‑101 (MQ=255)
ggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCCGGTCAGAcgccg > 1:1845/1‑99 (MQ=255)
ggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCCGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGCCCTCGAACCGGGTCAGACGCgg > 1:1341200/1‑101 (MQ=255)
ggTGCGCGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGGgg > 2:122288/1‑101 (MQ=255)
gTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGa > 2:2393342/1‑101 (MQ=255)
tGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGag > 2:487477/1‑100 (MQ=255)
tGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGAt > 1:738041/1‑101 (MQ=255)
ggggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGGTgcg > 2:2348761/1‑101 (MQ=255)
tctggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcgc < 2:173741/98‑1 (MQ=255)
gggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcgc > 2:3238310/1‑101 (MQ=255)
gggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcgc > 1:266601/1‑101 (MQ=255)
gggggggccccccccG.CGGGTCGCCCCGGCTT..GCCGGTGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCa < 1:622405/92‑1 (MQ=39)
ggggCGGAGCCCCCCG.CGGGTGGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCa > 1:2410128/1‑101 (MQ=255)
ggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcgcc > 2:1454700/1‑100 (MQ=255)
ggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGCGGATGCGCa > 1:2978527/1‑101 (MQ=255)
gggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAg > 1:1990706/1‑101 (MQ=255)
ggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAgg > 2:3759665/1‑101 (MQ=255)
ggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAga > 1:173779/1‑100 (MQ=255)
ggCCGAGCCCCCCG.CGGGGCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGGCCCAGACATTTCTGACCCCTAACCGGGCTGGACCCGGATGGGCCgg > 2:4122086/1‑101 (MQ=255)
cGGAGCCCCCCG.CGGGTCGCCCCGGCTT..CCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCTACCTCGAACCGGGCCAGACGCGGATGCGCACGCg > 2:1085213/1‑101 (MQ=39)
ggAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCgg > 1:3585038/1‑101 (MQ=255)
ggAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCgg > 2:4169143/1‑101 (MQ=255)
gAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCggg > 1:3963514/1‑101 (MQ=255)
gAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCggg > 2:688071/1‑101 (MQ=255)
aGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGc < 1:4230058/101‑1 (MQ=255)
gCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGcc > 2:2848319/1‑101 (MQ=255)
ccccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGGCg > 2:3940515/1‑101 (MQ=255)
ccccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCg > 2:2225828/1‑101 (MQ=255)
ccccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCg > 1:1644648/1‑101 (MQ=255)
cccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGa > 1:3733842/1‑101 (MQ=255)
cccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCCCCCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGAGGGGGCGGCGGGCCGa > 1:4098024/1‑101 (MQ=38)
ccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGaa < 1:3759922/101‑1 (MQ=255)
cccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGaaa > 2:807859/1‑101 (MQ=255)
g.cgGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGcc > 1:166179/1‑101 (MQ=255)
g.cgGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGcc > 2:289353/1‑101 (MQ=255)
gggTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGc < 1:122312/101‑1 (MQ=255)
ggTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCa > 1:1562814/1‑101 (MQ=255)
ggTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCa > 1:3135208/1‑101 (MQ=255)
ggTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCa > 1:2452518/1‑101 (MQ=255)
gTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCaa < 2:3111967/101‑1 (MQ=255)
tCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAg > 1:2147798/1‑101 (MQ=255)
tCGCCCCGGCTT..GCCGGGGCGAAACCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAg < 2:2911935/101‑1 (MQ=255)
cGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAgg > 2:1892352/1‑101 (MQ=255)
cGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAgg > 2:598079/1‑101 (MQ=255)
cGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAgg > 1:1911453/1‑101 (MQ=255)
gCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGc > 2:2297651/1‑101 (MQ=255)
ccccGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCt > 1:2324334/1‑101 (MQ=255)
ccccGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCt > 1:2879182/1‑101 (MQ=255)
ccGGCTT..GCCGGGGCGAAATCCCTCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTgg > 1:3404348/1‑101 (MQ=255)
gCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTGGCGa < 2:3327739/101‑1 (MQ=255)
cTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTGGCGaa > 2:2889313/1‑101 (MQ=255)
cTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTGGCGaa > 1:1676127/1‑101 (MQ=255)
cTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTGGCGaa > 1:391767/1‑101 (MQ=255)
tt..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTGGCGAAt > 2:1936543/1‑101 (MQ=255)
t..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTGGCGAAtt > 1:4131419/1‑101 (MQ=255)
t..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTGGCGAAtt > 2:2268236/1‑101 (MQ=255)
t..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTGGCGAAtt > 1:1329912/1‑101 (MQ=255)
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GCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGAAAGCCGCAAGGCTGGCGAATT > NC_014034/2995568‑2995759
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 31 ≤
ATCG
< 39 ≤
ATCG
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