New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1066609	196 (1.020)	2 (0.010)	2/182	31.3	0.01	coding (790/927 nt)	RCAP_rcc00971	hypothetical protein
	?	NC_014034	= 2261218	202 (0.950)					intergenic (‑218/+592)	RCAP_rcc02100/RCAP_rcc02103	IS3/IS911 family transposase/IS3/IS911 family transposase
Rejected: Position hash score below cutoff.

GGCCCGAGACCGGGCAGAACCGCAGCGGCAGGCTGTAGTTCGCGACGTTGTCGGTCTGGCCCTGCGCGGGCTTGCCGATCTCGACGGCCGGGGCGGTGATCTCGACGAT....................................................................................................  >  NC_014034/1066501‑1066609 ....................................................................................................CTCGACGATCGGCCTGGAGAACCTCTGCCGGATTTTCACGCGCGTGGCCGGGTCACGGCCGCGGATTTCCTTTTCGATGTGACCTGCCTCCCGGAAGTTCCCTCAATCT  <  NC_014034/2261218‑2261119                                                                                                                                                                                                                                                                                      GGGCTTGCCGATCTCGACGGCCGGGGCGGTGATCTCGACGATCGGCCTGGAGAACCTCTGCCGGATTTTCACGCGCGTGGCCGGGTCACGGCCGCGGATTT                                           >  2:881941/1‑101 (MQ=255)                                                                               TCTCGACGGCCGGGGCGGTGATCTCGACGATCGGCCTGGAGAACCTCTGCCGGATTTTCACGCGCGTGGCCGGGTCACGGCCGCGGATTTCCTTTTCGATG                                <  1:882022/101‑1 (MQ=255)                                                                                                                                                                                                                   GGCCCGAGACCGGGCAGAACCGCAGCGGCAGGCTGTAGTTCGCGACGTTGTCGGTCTGGCCCTGCGCGGGCTTGCCGATCTCGACGGCCGGGGCGGTGATCTCGACGAT....................................................................................................  >  NC_014034/1066501‑1066609 ....................................................................................................CTCGACGATCGGCCTGGAGAACCTCTGCCGGATTTTCACGCGCGTGGCCGGGTCACGGCCGCGGATTTCCTTTTCGATGTGACCTGCCTCCCGGAAGTTCCCTCAATCT  <  NC_014034/2261218‑2261119 Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG