New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1066869 =172 (0.900)2 (0.010) 2/180 31.1 0.01 coding (530/927 nt) RCAP_rcc00971 hypothetical protein
?NC_014034 = 1929327 205 (0.970)coding (1636/1665 nt) secD protein‑export membrane protein SecD
Rejected: Position hash score below cutoff.

AACTTCGTTCCGAAGCAGATCCCGAAGTTCAAGTTCAGCTTCATGGGCATGCTCGGGACCGTGACCGATGTCGCCCTTCCTGCGGTGACCATGACCGGCTGGACGACGCC....................................................................................................  <  NC_014034/1066978‑1066869
....................................................................................................GGACGACGCCAGCCGTACCAGATGACGATCATCAGCCGGACCACCCAGATCGCGGTGAAGATCGAGGCGGCGATGCCGATCATCGTGGTCACGGCAAAGCCGCGCACCGG  <  NC_014034/1929327‑1929228
                                                                                                                                                                                                                  
                                         CATGGGCATGCTCGGGACCGTGACCGATGTCGCCCTTCCTGCGGTGACCATGACCGGCTGGACGACGCCAGCCGTACCAGATGACGATCATCAGCCGGACC                                                                      >  2:624214/1‑101 (MQ=255)
                                                ATGCTCGGGACCGTGACCGATGTCGCCCTTCCTGCGGTGACCATGACCGGCTGGACGACGCCAGCCGTACCAGATGACGATCATCAGCCGGACCACCCAGA                                                               <  1:624278/101‑1 (MQ=255)
                                                                                                                                                                                                                  
AACTTCGTTCCGAAGCAGATCCCGAAGTTCAAGTTCAGCTTCATGGGCATGCTCGGGACCGTGACCGATGTCGCCCTTCCTGCGGTGACCATGACCGGCTGGACGACGCC....................................................................................................  <  NC_014034/1066978‑1066869
....................................................................................................GGACGACGCCAGCCGTACCAGATGACGATCATCAGCCGGACCACCCAGATCGCGGTGAAGATCGAGGCGGCGATGCCGATCATCGTGGTCACGGCAAAGCCGCGCACCGG  <  NC_014034/1929327‑1929228

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 41 ≤  ATCG