New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1143995 =219 (1.090)2 (0.010) 2/190 32.0 0.01 coding (66/1596 nt) hutH histidine ammonia‑lyase
?NC_014034 1209919 = 179 (0.840)coding (249/990 nt) RCAP_rcc01139 hypothetical protein
Rejected: Position hash score below cutoff.

TGCTCGGCGATGGCGTGCTCAAGCCGGGCATGGGCCCGCGCGCAGCGCTCGCGCAGCGCGGGGGTCACCGAAATCCGGCTGCGATGTGTCGCGATGGCCTCGCAT....................................................................................................  <  NC_014034/1144099‑1143995
....................................................................................................CGCATCGCCGAGGGCTACAGGCCCGGCGGCGTCACCATGATCATGATCCCGGCCTTTTCGGTCGCGCATTCGCAATTCGCGGTGGACGGGCAGACCTGGCCGGGC  >  NC_014034/1209919‑1210018
                                                                                                                                                                                                             
                                                                    tctAATCCGGCTGCGATGTGTCGCGATGGCCTCGCATCGCCGAGGGCTACAGGCCCGGCGGCGTCACCATGATCATGATCCCGGCCTTTTCGGTCGCGCAT                                      <  1:1117399/98‑1 (MQ=255)
                                                                       AATCCGGCTGCGATGTGTCGCGATGGCCTCGCATCGCCGAGGGCTACAGGCCCGGCGGCGTCACCATGATCATGATCCCGGCCTTTTCGGTCGCGCATaga                                   >  2:1117305/1‑98 (MQ=255)
                                                                                                                                                                                                             
TGCTCGGCGATGGCGTGCTCAAGCCGGGCATGGGCCCGCGCGCAGCGCTCGCGCAGCGCGGGGGTCACCGAAATCCGGCTGCGATGTGTCGCGATGGCCTCGCAT....................................................................................................  <  NC_014034/1144099‑1143995
....................................................................................................CGCATCGCCGAGGGCTACAGGCCCGGCGGCGTCACCATGATCATGATCCCGGCCTTTTCGGTCGCGCATTCGCAATTCGCGGTGGACGGGCAGACCTGGCCGGGC  >  NC_014034/1209919‑1210018

Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG