New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1173083196 (1.020)2 (0.010) 2/182 31.3 0.01 coding (504/1188 nt) RCAP_rcc01097 hypothetical protein
?NC_014034 = 2433350 166 (0.780)coding (517/1068 nt) RCAP_rcc02257 DegT/DnrJ/EryC1/StrS family aminotransferase
Rejected: Position hash score below cutoff.

AGCATCGAGACGGTGCGGCAGGGGGCGCAGGGATTCGAGGTGGTCACCTCGGACGGGATCTTGCGGGCGGCAAGGGTGGTGGTGGCGACGGGGGGCAAGTCGATCCCG....................................................................................................  >  NC_014034/1172976‑1173083
...................................................................................................TCGATCCCGCTGGCGGTGAGCCTGCATGCCACCAAAGCCTTCGGCTGCGGCGAGGGCGGGCTGGTGCTGTCGCGCGACACCCTTTTGCTGCAGGAGGCCTACAAGGGTC  <  NC_014034/2433350‑2433251
                                                                                                                                                                                                                
                                    GAGGTGGTCACCTCGGACGGGATCTTGCGGGCGGCAAGGGTGGTGGTGGCGACGGGGGGCAAGTCGATCCCGCTGGCGGTGAGCCTGCATGCCACCAAAGC                                                                         >  2:761504/1‑101 (MQ=255)
                                                                    GGCAAGGGTGGTGGTGGCGACGGGGGGCAAGTCGATCCCGCTGGCGGTGAGCCTGCATGCCACCAAAGCCTTCGGCTGCGGCGAGGGCGGGCTGGTGCTGT                                         <  1:761581/101‑1 (MQ=255)
                                                                                                                                                                                                                
AGCATCGAGACGGTGCGGCAGGGGGCGCAGGGATTCGAGGTGGTCACCTCGGACGGGATCTTGCGGGCGGCAAGGGTGGTGGTGGCGACGGGGGGCAAGTCGATCCCG....................................................................................................  >  NC_014034/1172976‑1173083
...................................................................................................TCGATCCCGCTGGCGGTGAGCCTGCATGCCACCAAAGCCTTCGGCTGCGGCGAGGGCGGGCTGGTGCTGTCGCGCGACACCCTTTTGCTGCAGGAGGCCTACAAGGGTC  <  NC_014034/2433350‑2433251

Base quality scores:  ATCG  < 3 ≤  ATCG  < 30 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG