New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1180669 =176 (0.900)2 (0.010) 2/184 31.5 0.02 coding (502/873 nt) RCAP_rcc01107 hypothetical protein
?NC_014034 2238204 = NA (NA)coding (578/1008 nt) gap2 glyceraldehyde‑3‑phosphate dehydrogenase
Rejected: Position hash score below cutoff.

GCTACGTGATCGACCTTTACGCCGCCGATCTGGGCAAGAACCCCGACGGGGTGAACCTGGCCGAGGCGATGCTGGACCGCACCGGCTATTACGCGCTGAGCCGCCCCG....................................................................................................  <  NC_014034/1180776‑1180669
....................................................................................................CCGCCCCGCGAAAGACCTGCGCCGGGCGCGGTCGGCGCTGATGAACCTCATTCCCACCACCACCGGCTCGGCCACGGCGATCACGCTGATCTATCCCGAGCTGAAAGG  >  NC_014034/2238204‑2238303
                                                                                                                                                                                                                
                                                                             CGCACCGGCTATTACGCGCTGAGCCGCCCCGCGAAAGACCTGCGCCGGGCGCGGTCGGCGCTGATGAACCTCATTCCCACCACCACCGGCTCGGCCACGGC                                >  2:2668702/1‑101 (MQ=255)
                                                                              GCACCGGCTATTACGCGCTGAGCCGCCCCGCGAAAGACCTGCGCCGGGCGCGGTCGGCGCTGATGAACCTCATTCCCACCACCACCGGCTCGGCCACGGCG                               <  1:2668908/101‑1 (MQ=255)
                                                                                                                                                                                                                
GCTACGTGATCGACCTTTACGCCGCCGATCTGGGCAAGAACCCCGACGGGGTGAACCTGGCCGAGGCGATGCTGGACCGCACCGGCTATTACGCGCTGAGCCGCCCCG....................................................................................................  <  NC_014034/1180776‑1180669
....................................................................................................CCGCCCCGCGAAAGACCTGCGCCGGGCGCGGTCGGCGCTGATGAACCTCATTCCCACCACCACCGGCTCGGCCACGGCGATCACGCTGATCTATCCCGAGCTGAAAGG  >  NC_014034/2238204‑2238303

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG