New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1183207 =162 (0.850)3 (0.020) 3/180 30.0 0.02 coding (230/2184 nt) RCAP_rcc01110 diguanylate cyclase/phosphodiesterase
?NC_014034 1693510 = 170 (0.800)coding (347/873 nt) mmsB 3‑hydroxyisobutyrate dehydrogenase
Rejected: Position hash score below cutoff.

GCGCCGCGCCCCGCCGCGGCGGTCGGGCAGCGACAGCGACGCCTCGTCCAGCCGCCCGTTCAGCCGCAGCTGCGGCAGCAGATGCGTGGTCCAGAACAGCCGCCCCGCCG....................................................................................................  <  NC_014034/1183316‑1183207
....................................................................................................CGCCCCGCCGACCCCGCCCGAGACCGGCGCGTCAAGCGCCCCCATGCCCGCCGTCGCCGCCTCGGCCGCCACGGCGCGGGCGCTTTCGACATCGACGGTCGAGCAATCGC  >  NC_014034/1693510‑1693609
                                                                                                                                                                                                                  
                                    CGACGCCTCGTCCAGCCGCCCGTTCAGCCGCAGCTGCGGCAGCAGATGCGTGGTCCAGAACAGCCGCCCCGCCGACCCCGCCCGAGACCGGCGCGTCAAGC                                                                           >  2:789113/1‑101 (MQ=255)
                                                                       GCGGCAGCAGATGCGGGGTCCAGAACAGCCGCCCCGCCGACCCCGCCCGAGACCGGCGCGTCAAGCGCCCCCATGCCCGCCGTCGCCGCCTCGGCCGCCAC                                        <  1:789191/101‑1 (MQ=255)
                                                                                                  cCCGCCCCGCCGACCCCGCCCGAGACCGGCGCGTCAAGCGCCCCCATGCCCGCCGTCGCCGCCTCGGCCGCCACGGCGCGGGCGCTTTCGACATCGACGGT             <  2:1238177/100‑1 (MQ=255)
                                                                                                                                                                                                                  
GCGCCGCGCCCCGCCGCGGCGGTCGGGCAGCGACAGCGACGCCTCGTCCAGCCGCCCGTTCAGCCGCAGCTGCGGCAGCAGATGCGTGGTCCAGAACAGCCGCCCCGCCG....................................................................................................  <  NC_014034/1183316‑1183207
....................................................................................................CGCCCCGCCGACCCCGCCCGAGACCGGCGCGTCAAGCGCCCCCATGCCCGCCGTCGCCGCCTCGGCCGCCACGGCGCGGGCGCTTTCGACATCGACGGTCGAGCAATCGC  >  NC_014034/1693510‑1693609

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG