New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1203549 =188 (0.950)2 (0.010) 2/186 31.7 0.01 coding (546/618 nt) RCAP_rcc01130 LuxR family transcriptional regulator
?NC_014034 1680756 = 182 (0.860)coding (955/3324 nt) RCAP_rcc01552 hypothetical protein
Rejected: Position hash score below cutoff.

GAAGAAAAAGCACCGCGGCGAGAAGTGAGGCGGCTCAGCGGCCGCCCTGCGCCGCGCGTCTGGGCGGGCCGATCGTGCTGGCCGGGATGTCGGTGAACCGGGCGGTG....................................................................................................  <  NC_014034/1203655‑1203549
....................................................................................................GGCGGTGAAGCCCGTCCCCTTTGACGGCGCCGATCTGAAACTGGCCTACCGGCCGCGCAGCGGCGTGGTGGAGATCACCCGGCTCGATCTGCAAAGCCGGGCCCTGC  >  NC_014034/1680756‑1680855
                                                                                                                                                                                                               
                            GGCGGCTCAGCGGCCGCCCTGCGCCGCGCGTCTGGGCGGGCCGATCGTGCTGGCCGGGATGTCGGTGAACCGGGCGGTGAAGCCCGTCCCCTTTGACGGCG                                                                                >  1:3067609/1‑101 (MQ=255)
                                 CTCAGCGGCCGCCCTGCGCCGCGCGTCTGGGCGGGCCGATCGTGCTGGCCGGGATGTCGGTGAACCGGGCGGTGAAGCCCGTCCCCTTTGACGGCGCCGAT                                                                           <  2:3067384/101‑1 (MQ=255)
                                                                                                                                                                                                               
GAAGAAAAAGCACCGCGGCGAGAAGTGAGGCGGCTCAGCGGCCGCCCTGCGCCGCGCGTCTGGGCGGGCCGATCGTGCTGGCCGGGATGTCGGTGAACCGGGCGGTG....................................................................................................  <  NC_014034/1203655‑1203549
....................................................................................................GGCGGTGAAGCCCGTCCCCTTTGACGGCGCCGATCTGAAACTGGCCTACCGGCCGCGCAGCGGCGTGGTGGAGATCACCCGGCTCGATCTGCAAAGCCGGGCCCTGC  >  NC_014034/1680756‑1680855

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 39 ≤  ATCG