New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1224228	154 (1.020)	13 (0.090)	7/142	22.3	0.11	intergenic (‑100/+69)	hisF/hisA	imidazole glycerol phosphate synthase subunit HisF/1‑(5‑phosphoribosyl)‑5‑[(5‑ phosphoribosylamino)methylideneamino] imidazole‑4‑carboxamide isomerase
	?	NC_014034	1303880 =	50 (0.240)					intergenic (+67/+90)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
Rejected: Position hash score below cutoff.

CGGGGCTCTGCCCCGCACCCCGGGATATTTGTGGCAAGATGAAA.................................................................  >  NC_014034/1224185‑1224228 .........................................................................TTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTG  >  NC_014034/1303880‑1303915                                             |||||||||||||||||||||||||||||                                     CGGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGG          <  2:1160218/101‑1 (MQ=0)  GGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGG         <  1:453316/101‑1 (MQ=0)  GGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGG         >  2:2866482/1‑101 (MQ=0)   GGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGT        <  1:372553/101‑1 (MQ=0)   GGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGT        <  2:4024248/101‑1 (MQ=2)    GGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTG       <  1:92500/101‑1 (MQ=0)    GGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTG       <  2:3788341/101‑1 (MQ=0)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA      <  1:2066169/101‑1 (MQ=2)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA      >  1:3560932/1‑101 (MQ=0)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA      <  1:789030/101‑1 (MQ=0)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA      <  2:4020936/101‑1 (MQ=0)       TCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAAT    <  1:1855141/101‑1 (MQ=2)         TGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATgc  >  1:2220411/1‑99 (MQ=0)                                             |||||||||||||||||||||||||||||                                     CGGGGCTCTGCCCCGCACCCCGGGATATTTGTGGCAAGATGAAA.................................................................  >  NC_014034/1224185‑1224228 .........................................................................TTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTG  >  NC_014034/1303880‑1303915 Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG