New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1224228	154 (1.020)	16 (0.110)	11/142	19.3	0.10	intergenic (‑100/+69)	hisF/hisA	imidazole glycerol phosphate synthase subunit HisF/1‑(5‑phosphoribosyl)‑5‑[(5‑ phosphoribosylamino)methylideneamino] imidazole‑4‑carboxamide isomerase
	?	NC_014034	2249335 =	144 (0.680)					intergenic (‑131/‑174)	parE/RCAP_rcc02080	DNA topoisomerase IV subunit B/HAD superfamily hydrolase
Rejected: Position hash score below cutoff.

CGGGGCTCTGCCCCGCACCCCGGGATATTTGTGGCAAGATGAAA....................................................................  >  NC_014034/1224185‑1224228 .........................................................................TTTCATCTTGCCGAAAATATCCCGGGGGGTGAATGGCGC  >  NC_014034/2249335‑2249373                                             |||||||||||||||||||||||||||||                                        CGGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGG             <  2:1160218/101‑1 (MQ=0)  GGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGG            <  1:453316/101‑1 (MQ=0)  GGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGG            >  2:2866482/1‑101 (MQ=0)   GGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGT           <  1:372553/101‑1 (MQ=0)   GGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGT           <  2:4024248/101‑1 (MQ=2)    GGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTG          <  1:92500/101‑1 (MQ=0)    GGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTG          <  2:3788341/101‑1 (MQ=0)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA         <  1:2066169/101‑1 (MQ=2)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA         >  1:3560932/1‑101 (MQ=0)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA         <  1:789030/101‑1 (MQ=0)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA         <  2:4020936/101‑1 (MQ=0)       TCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAAT       <  1:1855141/101‑1 (MQ=2)        CTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATG      <  1:2115244/101‑1 (MQ=2)         TGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATGc     >  1:2220411/1‑100 (MQ=0)          GCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATGcg    >  2:1640987/1‑99 (MQ=0)            CCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCATCTTGGCGAAAATATCCCGGGGGGTGAATGcgca  >  1:3665135/1‑97 (MQ=255)                                             |||||||||||||||||||||||||||||                                        CGGGGCTCTGCCCCGCACCCCGGGATATTTGTGGCAAGATGAAA....................................................................  >  NC_014034/1224185‑1224228 .........................................................................TTTCATCTTGCCGAAAATATCCCGGGGGGTGAATGGCGC  >  NC_014034/2249335‑2249373 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG