New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1224228	162 (1.050)	15 (0.100)	10/146	20.5	0.09	intergenic (‑100/+69)	hisF/hisA	imidazole glycerol phosphate synthase subunit HisF/1‑(5‑phosphoribosyl)‑5‑[(5‑ phosphoribosylamino)methylideneamino] imidazole‑4‑carboxamide isomerase
	?	NC_014034	2478698 =	153 (0.720)					intergenic (‑159/+98)	RCAP_rcc02304/RCAP_rcc02305	hypothetical protein/heme ABC transporter ATP‑binding/permease
Rejected: Position hash score below cutoff.

CGGGGCTCTGCCCCGCACCCCGGGATATTTGTGGCAAGATGAAA..................................................................  >  NC_014034/1224185‑1224228 .......................................................................CATTTCACCTTGGCCGAAATATCCCGGGGGGTGAATGGC  >  NC_014034/2478698‑2478736                                             |||||||||||||||||||||||||||                                        CGGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGG           <  2:1160218/101‑1 (MQ=0)  GGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGG          <  1:453316/101‑1 (MQ=0)  GGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGG          >  2:2866482/1‑101 (MQ=0)   GGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGT         <  1:372553/101‑1 (MQ=0)   GGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGT         <  2:4024248/101‑1 (MQ=2)    GGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTG        <  1:92500/101‑1 (MQ=0)    GGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTG        <  2:3788341/101‑1 (MQ=0)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA       <  1:2066169/101‑1 (MQ=2)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA       >  1:3560932/1‑101 (MQ=0)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA       <  1:789030/101‑1 (MQ=0)     GCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGA       <  2:4020936/101‑1 (MQ=0)       TCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAAT     <  1:1855141/101‑1 (MQ=2)        CTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATG    <  1:2115244/101‑1 (MQ=2)         TGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATGc   >  1:2220411/1‑100 (MQ=0)          GCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATGcg  >  2:1640987/1‑99 (MQ=0)                                             |||||||||||||||||||||||||||                                        CGGGGCTCTGCCCCGCACCCCGGGATATTTGTGGCAAGATGAAA..................................................................  >  NC_014034/1224185‑1224228 .......................................................................CATTTCACCTTGGCCGAAATATCCCGGGGGGTGAATGGC  >  NC_014034/2478698‑2478736 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG