New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1253890	31 (0.160)	26 (0.140)	2/178	30.9	0.33	intergenic (+48/+43)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
	?	NC_014034	2590190 =	73 (0.340)					intergenic (‑89/‑167)	glnE/RCAP_rcc02415	glutamate‑ammonia‑ligase adenylyltransferase/hypothetical protein
Rejected: Position hash score below cutoff.

CGCCGCGATGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG...................................................................................................  >  NC_014034/1253782‑1253890 ....................................................................................................GGGGGTGCGGGGGGCAGCGCCCCCGCCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTT  >  NC_014034/2590190‑2590288                                                                                                                                                                                                                            GTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCCTCTTGCCCTAAATACCTCGGGGGTGCGGG                                                                                                   >  2:773657/1‑101 (MQ=1)            TGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGG                                                                                                  >  2:3794108/1‑101 (MQ=1)            TGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGG                                                                                                  >  1:2640140/1‑101 (MQ=1)             GCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCACATCTTGCCCTAAATACCTCGGGGGTGCGGGGG                                                                                                 >  1:3624506/1‑101 (MQ=1)               TGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcg                                                                                               >  2:3186399/1‑99 (MQ=1)               TGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcg                                                                                               >  1:2337399/1‑99 (MQ=1)               TGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcg                                                                                               >  1:2931106/1‑99 (MQ=1)                GGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGGGCGGGGGcgg                                                                                              >  1:3080398/1‑98 (MQ=1)                 GGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggg                                                                                             >  2:1758546/1‑97 (MQ=1)                 GGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcgga                                                                                             <  1:2679440/101‑5 (MQ=1)                   CAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggagc                                                                                           >  1:212548/1‑95 (MQ=1)                   CAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggagc                                                                                           >  2:1534348/1‑95 (MQ=1)                    AAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggagcc                                                                                          <  2:3216606/101‑8 (MQ=1)                    AAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggagcc                                                                                          >  1:4049554/1‑94 (MQ=1)                    AAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTGGCCCTAAATACCTCGGGGGTGCGGGGGcggagcc                                                                                          >  1:3634017/1‑94 (MQ=1)                      GCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggagcccc                                                                                        >  1:50021/1‑92 (MQ=1)                       CTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggagccccc                                                                                       <  2:1127441/101‑11 (MQ=1)                       CTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGcggagccccc                                                                                       <  2:2159290/101‑11 (MQ=1)                        TCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCGGGGGGggggcccccc                                                                                      >  1:1460698/1‑91 (MQ=0)                         CGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGC                                                                                    >  1:1317538/1‑101 (MQ=11)                           GCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCG                                                                                  >  2:4211921/1‑101 (MQ=32)                            CTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGG                                                                                 >  1:1995106/1‑101 (MQ=32)                             TTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGG                                                                                >  1:3849256/1‑101 (MQ=32)                                    CCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCCTC                                                                         >  2:2189547/1‑101 (MQ=32)                                       GCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCCTCGGC                                                                      >  2:1528949/1‑101 (MQ=32)                                        CTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCCTCGGCG                                                                     >  1:88677/1‑101 (MQ=32)                                        CTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGC.GGGGGCGGAGCCCCCGCCGGGTCGCCTCGGCG                                                                     >  1:1134001/1‑101 (MQ=32)                                                                                                                                                                                                                  CGCCGCGATGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAACCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCTCGGGGGTGCG...................................................................................................  >  NC_014034/1253782‑1253890 ....................................................................................................GGGGGTGCGGGGGGCAGCGCCCCCGCCGGGTCGCCTCGGCGCAAGCCGAGGCGAAATCTCTCCCCGACCCCTTGCGGCGCAATGTAAAAATCTTTCACATCCCCTCTT  >  NC_014034/2590190‑2590288 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG