New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1262867206 (1.070)2 (0.010) 2/182 31.3 0.01 coding (202/855 nt) phnE1 phosphonate ABC transporter permease PhnE
?NC_014034 2936443 = 157 (0.740)coding (1031/3084 nt) RCAP_rcc02747 acriflavin resistance protein family
Rejected: Position hash score below cutoff.

GTGCTGATGGCGTCGGGATGGCGCACGGCCGATGCCCGCAACGCCGGCGGCTTTCTCGATGGCATCGCGCATATTCTTGATTTTCCGATCGAAATCCTGTCCGAGGCGG....................................................................................................  >  NC_014034/1262759‑1262867
....................................................................................................CCGAGGCGGTGGCGATCGTGCTTCTGGTCTCCTTCGTGTCGCTGGGCTGGCGGGCGGGGCTTGTGGTGACGATGTCGATCCCGCTGGTTCTGGCGCTGACCTTCGTCAT  >  NC_014034/2936443‑2936542
                                                                                                                                                                                                                 
                                                                          TCTTGATTTTCCGATCGAAATCCTGTCCGAGGCGGTGGCGATCGTGCTTCTGGTCTCCTTCGTGTCGCTGGGCTGGCGGGCGGGGCTTTTGGTGGCGGTGT                                    >  2:2283650/1‑101 (MQ=255)
                                                                          TCTTGATTTTCCGATCGAAATCCTGTCCGAGGCGGTGGCGATCGTGCTTCTGGTCTCCTTCGTGTCGCTGGGCTGGCGGGCGGGGCTTGTGGTGACGATGT                                    <  1:2283818/101‑1 (MQ=255)
                                                                                                                                                                                                                 
GTGCTGATGGCGTCGGGATGGCGCACGGCCGATGCCCGCAACGCCGGCGGCTTTCTCGATGGCATCGCGCATATTCTTGATTTTCCGATCGAAATCCTGTCCGAGGCGG....................................................................................................  >  NC_014034/1262759‑1262867
....................................................................................................CCGAGGCGGTGGCGATCGTGCTTCTGGTCTCCTTCGTGTCGCTGGGCTGGCGGGCGGGGCTTGTGGTGACGATGTCGATCCCGCTGGTTCTGGCGCTGACCTTCGTCAT  >  NC_014034/2936443‑2936542

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG