New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1270414	177 (0.880)	2 (0.010)	2/190	32.0	0.01	coding (227/684 nt)	phnL	phosphonates transport ATP‑binding protein PhnL
	?	NC_014034	= 3305748	206 (0.970)					coding (497/1779 nt)	RCAP_rcc03110	ABC transporter ATP‑binding/permease
Rejected: Position hash score below cutoff.

CGCTTCGGGCAGCGGGAAATCGACGCTGATGCGGATGATCTGGGGCAATTACCGCGCCGAGACGGGGCGGCTGCGGGTGGGGGGGCTCGATCTGACCACGGCGAC....................................................................................................  >  NC_014034/1270310‑1270414 ....................................................................................................GCGACACCAGCGACACCGCATCGCGCCCCGCCCCGGAGACGAAGACGCTCCAGACCCCCTGCACCGCCTGGGTGTCGCCCTGCACCCGGTCGATCAGCGCGCCGG  <  NC_014034/3305748‑3305649                                                                                                                                                                                                                                                      CTGGGGCAATTACCGCGCCGAGACGGGGCGGCTGCGGGTGGGGGGGCTCGATCTGACCACGGCGACACCAGCGACACCGCATCGCGCCCCGCCCCGGAGAC                                                                   >  2:1191240/1‑101 (MQ=255)                                               AATTCCCGCGCCGAGACGGGGCGGCTGCGGGTGGGGGGGCTCGATCTGACCACGGCGACACCAGCGACACCGCATCGCGCCCCGCCCCGGAGACGAAGACG                                                            <  1:1191334/101‑1 (MQ=255)                                                                                                                                                                                                               CGCTTCGGGCAGCGGGAAATCGACGCTGATGCGGATGATCTGGGGCAATTACCGCGCCGAGACGGGGCGGCTGCGGGTGGGGGGGCTCGATCTGACCACGGCGAC....................................................................................................  >  NC_014034/1270310‑1270414 ....................................................................................................GCGACACCAGCGACACCGCATCGCGCCCCGCCCCGGAGACGAAGACGCTCCAGACCCCCTGCACCGCCTGGGTGTCGCCCTGCACCCGGTCGATCAGCGCGCCGG  <  NC_014034/3305748‑3305649 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG