New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1288438 =194 (0.980)2 (0.010) 2/186 31.7 0.01 coding (246/1347 nt) glmM phosphoglucosamine mutase
?NC_014034 2158997 = 212 (1.000)coding (588/3858 nt) RCAP_rcc02005 hypothetical protein
Rejected: Position hash score below cutoff.

CGGGGCCGAAGAACTTGATTCCGTTGTCCTTTGCCGGGTTGTGGCTGGCCGAGATCATGATCCCCAGATCCGCCCGCATCGAGCGCGTCAGATAGCCCACCGCGGGC....................................................................................................  <  NC_014034/1288544‑1288438
....................................................................................................CGCGGGCATTGGGGATAGAGAGTTCGGTTCTGCCGCGCGGCATGGCGCGGCTGGCGCGGAATTGGGGCGAGGAGGAAATTCAAACCTATTTCGTGGTCGATGTAGCG  >  NC_014034/2158997‑2159096
                                                                                                                                                                                                               
                                                  GAGATCATGATCCCCAGATCCGCCCGCATCGAGCGCGTCAGATAGCCCACCGCGGGCATTGGGGATAGAGAGTTCGGTTCTGCCGCGCGGCATGGCGCGGC                                                          >  1:3124357/1‑101 (MQ=255)
                                                                       GCCCGCATCGAGCGCGTCAGATAGCCCACCGCGGGCATTGGGGATAGAGAGTTCGGTTCTGCCGCGCGGCATGGCGCGGCTGGCGCGGAATTGGGGCGAGG                                     <  2:3124126/101‑1 (MQ=255)
                                                                                                                                                                                                               
CGGGGCCGAAGAACTTGATTCCGTTGTCCTTTGCCGGGTTGTGGCTGGCCGAGATCATGATCCCCAGATCCGCCCGCATCGAGCGCGTCAGATAGCCCACCGCGGGC....................................................................................................  <  NC_014034/1288544‑1288438
....................................................................................................CGCGGGCATTGGGGATAGAGAGTTCGGTTCTGCCGCGCGGCATGGCGCGGCTGGCGCGGAATTGGGGCGAGGAGGAAATTCAAACCTATTTCGTGGTCGATGTAGCG  >  NC_014034/2158997‑2159096

Base quality scores:  ATCG  < 3 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 36 ≤  ATCG  < 41 ≤  ATCG