New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1303918	78 (0.380)	28 (0.140)	2/190	32.0	0.26	intergenic (+105/+52)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
	?	NC_014034	1303919 =	78 (0.370)					intergenic (+106/+51)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
Rejected: Position hash score below cutoff.

GCGCTGCCTCCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCC........................  >  NC_014034/1303822‑1303918 .....................................................................................................GCCAAGATGGGGGGCCCCCC  >  NC_014034/1303919‑1303938                                                                                                  ||||                     gctgccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAG                      >  2:376901/11‑101 (MQ=0) gctgccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAG                      >  1:4099139/11‑101 (MQ=0) gctgccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAG                      <  2:1153230/91‑1 (MQ=0)   cgccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGC                    <  2:3666121/93‑1 (MQ=0)    gccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCC                   <  1:4103132/94‑1 (MQ=0)    gccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCC                   >  2:3236168/8‑101 (MQ=0)    gccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCC                   <  1:534082/94‑1 (MQ=0)     ccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCA                  <  2:2102987/95‑1 (MQ=0)      cccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAA                 >  1:181312/6‑101 (MQ=1)      cccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAA                 <  2:2328502/96‑1 (MQ=1)      cccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAA                 <  2:1305288/96‑1 (MQ=1)      cccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAA                 <  2:2813146/96‑1 (MQ=1)        cctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA               <  2:679986/98‑1 (MQ=1)        cctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAAGCCAAGA               >  2:2369860/4‑101 (MQ=0)         ctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAg              <  2:2388111/99‑2 (MQ=11)            GGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGG           >  2:2571253/1‑101 (MQ=32)             GCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGGGAATTGGCCGAAGGCCAAGAGGGGG          >  2:960633/1‑101 (MQ=17)              CTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGG         >  2:2184501/1‑101 (MQ=32)               TTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGc        >  1:1799896/1‑100 (MQ=33)                TCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGca       <  2:2099847/101‑3 (MQ=34)                TCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGca       >  1:3326953/1‑99 (MQ=34)                TCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGca       <  1:1871320/101‑3 (MQ=34)                 CGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATTTCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcag      <  1:960724/101‑4 (MQ=25)                 CGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcag      >  2:1726524/1‑98 (MQ=35)                 CGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcag      >  1:1622618/1‑98 (MQ=35)                  GCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagc     <  2:3670734/101‑5 (MQ=35)                  GCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagc     >  1:2938077/1‑97 (MQ=35)                    CTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcgc   >  2:3270389/1‑95 (MQ=35)                    CTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcgc   >  1:1022427/1‑95 (MQ=35)                     TCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcgcc  >  1:439035/1‑94 (MQ=35)                     TCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGaagcgcc  >  1:4120101/1‑94 (MQ=25)                                                                                                  ||||                     GCGCTGCCTCCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCC........................  >  NC_014034/1303822‑1303918 .....................................................................................................GCCAAGATGGGGGGCCCCCC  >  NC_014034/1303919‑1303938 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG