New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1303934 =80 (0.400)43 (0.210) 29/190 15.1 0.26 intergenic (+121/+36) urtE/RCAP_rcc01231 urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
?NC_014034 3003970 = 162 (0.760)intergenic (+16/+160) gfo/lrp glucose‑‑fructose oxidoreductase/leucine‑responsive regulatory protein
Rejected: Position hash score below cutoff.

CTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG....................................................................................................  <  NC_014034/1304038‑1303934
....................................................................................................GGGGGCGCTGCCCCCCTCTTGGCCTGACGGCCAATTCACCCCCCGGGATATTTGGACCAAGGTGAAAGCAGATCCCGGTTTGCCTTTCACCTTGGCGCAAATATC  >  NC_014034/3003970‑3004069
                                                                                                                                                                                                             
     CGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGC                                                                                                     <  1:3029792/101‑1 (MQ=1)
       cgtTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGC                                                                                                   <  1:3800748/98‑1 (MQ=1)
        GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCT                                                                                                  <  1:3037535/101‑1 (MQ=1)
         CTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG                                                                                                 >  2:2545846/1‑101 (MQ=1)
          TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGC                                                                                                >  2:749433/1‑101 (MQ=1)
          TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGC                                                                                                >  1:1466554/1‑101 (MQ=1)
           TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGgggcc                                                                                               >  2:495037/1‑96 (MQ=1)
           TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCC                                                                                               <  1:1381043/101‑1 (MQ=1)
            TATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCC                                                                                              >  2:2336286/1‑101 (MQ=1)
             agGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCC                                                                                             <  1:3211655/99‑1 (MQ=1)
             ATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCC                                                                                             >  1:552135/1‑101 (MQ=1)
                 GTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTC                                                                                         <  1:169244/101‑1 (MQ=1)
                 GTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTC                                                                                         <  1:1179547/101‑1 (MQ=1)
                  TTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCT                                                                                        <  1:3506749/101‑1 (MQ=1)
                   TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT                                                                                       <  2:2333683/101‑1 (MQ=1)
                     AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG                                                                                     <  1:3974830/101‑1 (MQ=1)
                     AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG                                                                                     >  2:2694938/1‑101 (MQ=1)
                     AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGG                                                                                     >  2:3837480/1‑101 (MQ=1)
                       GCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCC                                                                                   <  2:206591/101‑1 (MQ=1)
                        CCGGTGCGCAAGGCCCTGATGCGGGCGGGCTTGGGGATGCGGTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT                                                                                  <  1:2730796/101‑1 (MQ=0)
                        CCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT                                                                                  >  2:1689231/1‑101 (MQ=1)
                         CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTt                                                                                 >  1:2517444/1‑100 (MQ=11)
                          GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtc                                                                                <  2:1631221/101‑3 (MQ=31)
                          GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtc                                                                                <  2:1181236/101‑3 (MQ=31)
                           GTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtcg                                                                               <  1:768462/101‑4 (MQ=32)
                            TGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtcgg                                                                              <  2:2330204/101‑5 (MQ=32)
                              CGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtcggcc                                                                            <  2:3798482/101‑7 (MQ=32)
                               ggAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtcggcca                                                                           <  2:1452735/99‑8 (MQ=17)
                               gatAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtcggcca                                                                           <  2:3568170/98‑8 (MQ=17)
                               GCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtcggcca                                                                           <  1:1293546/101‑8 (MQ=32)
                               GCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTtcggcca                                                                           <  2:2141158/101‑8 (MQ=32)
                                CAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAA                                                                         <  1:1707650/101‑1 (MQ=32)
                                 AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAAT                                                                        >  2:920928/1‑101 (MQ=14)
                                 AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAAT                                                                        >  1:3889132/1‑101 (MQ=14)
                                 AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAAT                                                                        <  2:1772094/101‑1 (MQ=14)
                                  AGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATT                                                                       <  2:3677760/101‑1 (MQ=11)
                                   GACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTC                                                                      >  2:86585/1‑101 (MQ=1)
                                     CCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCAC                                                                    <  1:859231/101‑1 (MQ=14)
                                      CCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACC                                                                   <  2:2108071/101‑1 (MQ=14)
                                      CCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACC                                                                   >  1:3744536/1‑101 (MQ=17)
                                      CCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACC                                                                   >  2:1490184/1‑101 (MQ=17)
                                        TGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCC                                                                 >  2:1805826/1‑101 (MQ=17)
                                        TGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCC                                                                 <  1:1267025/101‑1 (MQ=14)
                                            GCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGG                                                             >  1:3236409/1‑101 (MQ=0)
                                             gGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGG                                                            <  1:2686425/100‑1 (MQ=0)
                                             CGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGG                                                            <  1:1811778/101‑1 (MQ=0)
                                              GGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGA                                                           <  2:777840/101‑1 (MQ=0)
                                               GGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGAT                                                          <  2:614280/101‑1 (MQ=2)
                                               GGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGAT                                                          <  1:508911/101‑1 (MQ=2)
                                               GGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGAT                                                          <  2:3571587/101‑1 (MQ=2)
                                               GGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGAT                                                          <  2:1217831/101‑1 (MQ=2)
                                                GCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATA                                                         <  2:282599/101‑1 (MQ=9)
                                                GCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATA                                                         >  2:438978/1‑101 (MQ=9)
                                                 CGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATAT                                                        <  2:3302172/101‑1 (MQ=12)
                                                  GGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATT                                                       >  1:26126/1‑101 (MQ=255)
                                                  GGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATT                                                       >  2:1695344/1‑101 (MQ=255)
                                                  GGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATT                                                       <  2:1159689/101‑1 (MQ=255)
                                                  GGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATT                                                       <  2:1065187/101‑1 (MQ=255)
                                                   GGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATTT                                                      <  1:2051878/101‑1 (MQ=255)
                                                   GGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATTT                                                      <  2:1561851/101‑1 (MQ=255)
                                                   GGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATTT                                                      <  2:1635754/101‑1 (MQ=255)
                                                    GCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATTTG                                                     <  2:629049/101‑1 (MQ=255)
                                                    GCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATTTG                                                     <  1:2849983/101‑1 (MQ=255)
                                                     CTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATTTGc                                                    >  1:1930832/1‑100 (MQ=255)
                                                     CTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATTTGc                                                    <  2:2601793/101‑2 (MQ=255)
                                                     CTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATTTGc                                                    <  1:2614464/101‑2 (MQ=255)
                                                      TTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATTTGcg                                                   >  2:1622509/1‑99 (MQ=255)
                                                      TTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCT.TCGGCCAATTCACCCCCCGGGATATTTGcg                                                   >  1:703689/1‑99 (MQ=255)
                                                                                                                                                                                                             
CTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG....................................................................................................  <  NC_014034/1304038‑1303934
....................................................................................................GGGGGCGCTGCCCCCCTCTTGGCCTGACGGCCAATTCACCCCCCGGGATATTTGGACCAAGGTGAAAGCAGATCCCGGTTTGCCTTTCACCTTGGCGCAAATATC  >  NC_014034/3003970‑3004069

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG