New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1303942 =	85 (0.510)	4 (0.020)	3/156	27.6	0.03	intergenic (+129/+28)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
	?	NC_014034	= 1478624	143 (0.680)					intergenic (+112/+31)	RCAP_rcc01372/RCAP_rcc01373	ABC transporter ATP‑binding protein/RpiR family transcriptional regulator
Rejected: Position hash score below cutoff.

GCCCCGA.............................................................................................................  <  NC_014034/1303948‑1303942 ..............................CTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG  <  NC_014034/1478624‑1478539        ||||||||||||||||||||||                                                                                        gaannGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTT                 <  1:3411441/96‑1 (MQ=255)   aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC               >  2:6764/4‑101 (MQ=255)   aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC               >  1:1150394/4‑101 (MQ=255)   aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC               >  1:1169671/4‑101 (MQ=255)   aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC               >  2:663617/4‑101 (MQ=255)   aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC               >  2:2551753/4‑101 (MQ=255)   aagGAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGC               >  2:2019182/4‑101 (MQ=255)      GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC            >  2:3250834/1‑101 (MQ=16)      GAGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCC            >  1:2177710/1‑101 (MQ=16)       AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA           <  2:1995121/101‑1 (MQ=12)       AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA           <  1:429347/101‑1 (MQ=12)       AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA           >  1:1020432/1‑101 (MQ=12)       AGGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCA           <  1:2159448/101‑1 (MQ=12)        GGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAA          >  2:3203863/1‑101 (MQ=16)        GGGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAA          >  1:2606162/1‑101 (MQ=12)         GGGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAA         <  2:2157241/101‑1 (MQ=12)          GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCTCCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT        <  1:2754102/101‑1 (MQ=255)          GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT        <  1:2348271/101‑1 (MQ=12)          GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT        <  2:2798058/101‑1 (MQ=12)          GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT        <  1:3161750/101‑1 (MQ=12)          GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT        <  1:1962028/101‑1 (MQ=12)          GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT        <  2:3454069/101‑1 (MQ=12)          GGGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT        <  2:3697992/101‑1 (MQ=12)          GGGCGATGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAAT        >  1:1407554/1‑101 (MQ=255)           GGCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATA       <  2:3836704/101‑1 (MQ=12)            GCGCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATAT      <  2:2452728/101‑1 (MQ=12)             atCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATC     <  1:2195215/99‑1 (MQ=2)              GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC    <  1:768058/101‑1 (MQ=9)              GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC    >  1:346105/1‑101 (MQ=12)              GCTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCC    <  2:2917679/101‑1 (MQ=9)               CTGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCC   <  1:464521/101‑1 (MQ=9)                TGCCCCCCTCTTGGCCTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG  >  1:207456/1‑101 (MQ=9)        ||||||||||||||||||||||                                                                                        GCCCCGA.............................................................................................................  <  NC_014034/1303948‑1303942 ..............................CTCTCGGCCAATTCACCCCCCGGGATATTTGAAGCAAGATAAATGAAAACCGCAGATCGTGCTTTCATCTTGCTCCAAATATCCCG  <  NC_014034/1478624‑1478539 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG