New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1385516 =165 (0.830)2 (0.010) 2/188 31.8 0.01 coding (277/1239 nt) RCAP_rcc01298 SNF2 family helicase
?NC_014034 2916886 = 202 (0.950)coding (277/357 nt) RCAP_rcc02725 hypothetical protein
Rejected: Position hash score below cutoff.

GGGCAACCTTGTCCTTCATCCGTCGCAGCGCGAGCGGGGGCAACCCGTCTTGCGGCGTGAACACCCGCGCGTGCAGCTCGGCCATATTGGCCTCGTCCGGTTCGCC....................................................................................................  <  NC_014034/1385621‑1385516
....................................................................................................TTCGCCTATCTGGCCATCGCGCGCACCAAGCCGCGCCATGCGCCGATCCCGCTTTCCCAACTCATCGCGACAGAGGAGGCCGCCTGATGCGCGCCGTGCTTGCCTG  >  NC_014034/2916886‑2916985
                                                                                                                                                                                                              
                                  CGGGGGCAACCCGTCTTGCGGCGTGAACACCCGCGCGTGCAGCTCGGCCATATTGGCCTCGTCCGGTTCGCCTATCTGGCCATCGCGCGCACCAAGCCGCG                                                                         >  2:157363/1‑101 (MQ=255)
                                     GGGCAACCCGTCTTGCGGCGTGAACACCCGCGCGTGCAGCTCGGCCATATTGGCCTCGTCCGGTTCGCCTATCTGGCCATCGCGCGCACCAAGCCGCGCCA                                                                      <  1:157401/101‑1 (MQ=255)
                                                                                                                                                                                                              
GGGCAACCTTGTCCTTCATCCGTCGCAGCGCGAGCGGGGGCAACCCGTCTTGCGGCGTGAACACCCGCGCGTGCAGCTCGGCCATATTGGCCTCGTCCGGTTCGCC....................................................................................................  <  NC_014034/1385621‑1385516
....................................................................................................TTCGCCTATCTGGCCATCGCGCGCACCAAGCCGCGCCATGCGCCGATCCCGCTTTCCCAACTCATCGCGACAGAGGAGGCCGCCTGATGCGCGCCGTGCTTGCCTG  >  NC_014034/2916886‑2916985

Base quality scores:  ATCG  < 3 ≤  ATCG  < 30 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG