New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | 1395365 = | 139 (1.010) | 35 (0.250) | 2/130 | 25.9 | 0.19 | intergenic (+177/‑754) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
? | NC_014034 | = 1395396 | 152 (0.720) | intergenic (+208/‑723) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein | |||||
Rejected: Position hash score below cutoff. |
CAGCGGGTGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC............................................................................. < NC_014034/1395407‑1395365
..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGCCGTTTCG < NC_014034/1395396‑1395355
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gcgcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGG < 1:434030/93‑1 (MQ=0)
cgcgcccGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGG < 2:4119558/94‑1 (MQ=2)
cgcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGCTCCACGCCCCCGCGGGG > 2:303094/8‑101 (MQ=0)
cgcacgcgGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGG < 1:444584/93‑1 (MQ=1)
cgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCTCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGG > 1:3571313/6‑101 (MQ=2)
cgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGG > 2:1795645/6‑101 (MQ=11)
gcccGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGA < 1:812489/97‑1 (MQ=11)
gcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGg > 2:4135168/5‑100 (MQ=11)
ccgcggtGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGA < 2:3193246/94‑1 (MQ=0)
cacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGgg > 1:1170059/4‑99 (MQ=11)
cacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAG < 2:1964467/98‑1 (MQ=11)
cacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAG < 2:1986429/98‑1 (MQ=11)
ccGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGC < 2:3956885/99‑1 (MQ=11)
acGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGC > 2:449355/3‑101 (MQ=11)
GCAGTTTCGATCCACGCTCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA < 2:3799775/101‑1 (MQ=1)
CAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC < 1:418309/101‑1 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGGGCGACg > 1:1248864/1‑100 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg > 1:444287/1‑100 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg > 2:499947/1‑100 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg > 1:2647483/1‑100 (MQ=1)
GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGAGAGCGACgt < 2:1220508/101‑3 (MQ=1)
GTTTCGAGCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgt < 2:721106/101‑3 (MQ=1)
TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtg > 2:26960/1‑98 (MQ=1)
TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtg < 2:2396321/101‑4 (MQ=1)
TTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgc < 1:1743777/101‑5 (MQ=1)
TCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgcg < 1:1951001/101‑6 (MQ=1)
TCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgcg > 2:1713020/1‑96 (MQ=1)
CGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgcga < 1:3733577/101‑7 (MQ=1)
GATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgcgag > 1:2900958/1‑94 (MQ=0)
ATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgcgagg > 2:404372/1‑93 (MQ=0)
TCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgcgaggg > 1:1796616/1‑92 (MQ=0)
TCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgcgaggg > 2:212854/1‑92 (MQ=0)
CCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgcgagggc > 1:599133/1‑91 (MQ=0)
CCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgcgagggc > 2:959109/1‑91 (MQ=0)
CCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgtgcgagggc < 2:988126/101‑11 (MQ=0)
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CAGCGGGTGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC............................................................................. < NC_014034/1395407‑1395365
..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTGCCGTTTCG < NC_014034/1395396‑1395355
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 39 ≤
ATCG
|