| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_014034 | 1395365 = | 139 (1.010) | 35 (0.250) | 2/130 | 25.9 | 0.20 | intergenic (+177/‑754) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| ? | NC_014034 | = 1397867 | 147 (0.690) | intergenic (+171/+1727) | RCAP_rcc01307/RCAP_rcc01309 | hypothetical protein/IS66 family transposase | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
CAGCGGGTGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC............................................................................. < NC_014034/1395407‑1395365
..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATGGCGATGC < NC_014034/1397867‑1397826
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gcgcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGG < 1:434030/93‑1 (MQ=0)
cgcgcccGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGG < 2:4119558/94‑1 (MQ=2)
cgcgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGCTCCACGCCCCCGCGGGG > 2:303094/8‑101 (MQ=0)
cgcacgcgGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGG < 1:444584/93‑1 (MQ=1)
cgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCTCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGG > 1:3571313/6‑101 (MQ=2)
cgcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGG > 2:1795645/6‑101 (MQ=11)
gcccGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGA < 1:812489/97‑1 (MQ=11)
gcacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGg > 2:4135168/5‑100 (MQ=11)
ccgcggtGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGA < 2:3193246/94‑1 (MQ=0)
cacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGgg > 1:1170059/4‑99 (MQ=11)
cacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAG < 2:1964467/98‑1 (MQ=11)
cacGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAG < 2:1986429/98‑1 (MQ=11)
ccGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGC < 2:3956885/99‑1 (MQ=11)
acGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGC > 2:449355/3‑101 (MQ=11)
GCAGTTTCGATCCACGCTCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA < 2:3799775/101‑1 (MQ=1)
CAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC < 1:418309/101‑1 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGGGCGACg > 1:1248864/1‑100 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg > 1:444287/1‑100 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg > 2:499947/1‑100 (MQ=1)
AGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg > 1:2647483/1‑100 (MQ=1)
GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGAGAGCGACgt < 2:1220508/101‑3 (MQ=1)
GTTTCGAGCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgt < 2:721106/101‑3 (MQ=1)
TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTG > 2:26960/1‑101 (MQ=1)
TTTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTG < 2:2396321/101‑1 (MQ=1)
TTCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGc < 1:1743777/101‑2 (MQ=1)
TCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGcg < 1:1951001/101‑3 (MQ=1)
TCGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGcg > 2:1713020/1‑99 (MQ=1)
CGATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGcga < 1:3733577/101‑4 (MQ=1)
GATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGcgag > 1:2900958/1‑97 (MQ=0)
ATCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGcgagg > 2:404372/1‑96 (MQ=0)
TCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGcgaggg > 1:1796616/1‑95 (MQ=0)
TCCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGcgaggg > 2:212854/1‑95 (MQ=0)
CCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGcgagggc > 1:599133/1‑94 (MQ=0)
CCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGcgagggc > 2:959109/1‑94 (MQ=0)
CCACGCCCCCGCGGGGGGAGCGACGGGCGGGTCCGTCAGCCATAGGCCCGCGCCGCATTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTGcgagggc < 2:988126/101‑8 (MQ=0)
|||||||||||||||||||||||||||||||||||
CAGCGGGTGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC............................................................................. < NC_014034/1395407‑1395365
..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATGGCGATGC < NC_014034/1397867‑1397826
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 39 ≤
ATCG
|