New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1395396	157 (1.120)	39 (0.280)	5/132	22.9	0.22	intergenic (+208/‑723)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	1395831 =	114 (0.540)					intergenic (+643/‑288)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
Rejected: Position hash score below cutoff.

CGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.................................................................................  >  NC_014034/1395355‑1395396 ............................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGCCGCCTATCG  >  NC_014034/1395831‑1395877                                           ||||||||||||||||||||||||||||||||||                                                gccctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG                        >  2:988126/11‑101 (MQ=0) gccctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG                        <  2:959109/91‑1 (MQ=0) gccctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG                        <  1:599133/91‑1 (MQ=0)  ccctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA                       <  1:1796616/92‑1 (MQ=0)  ccctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA                       <  2:212854/92‑1 (MQ=0)   cctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGAT                      <  2:404372/93‑1 (MQ=0)    ctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATC                     <  1:2900958/94‑1 (MQ=0)     tcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCG                    >  1:3733577/7‑101 (MQ=1)      cgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                   >  1:1951001/6‑101 (MQ=1)      cgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                   <  2:1713020/96‑1 (MQ=1)       gcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                  >  1:1743777/5‑101 (MQ=1)        cacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                 >  2:2396321/4‑101 (MQ=1)        cacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                 <  2:26960/98‑1 (MQ=1)         acGTCGCTCTCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                >  2:1220508/3‑101 (MQ=1)         acGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGCTCGAAAC                >  2:721106/3‑101 (MQ=1)          cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT               <  1:444287/100‑1 (MQ=1)          cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT               <  2:499947/100‑1 (MQ=1)          cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT               <  1:2647483/100‑1 (MQ=1)          cGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT               <  1:1248864/100‑1 (MQ=1)           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTG              >  1:418309/1‑101 (MQ=1)            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGAGCGTGGATCGAAACTGC             >  2:3799775/1‑101 (MQ=1)              GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGt           <  2:449355/101‑2 (MQ=11)              GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGg           >  2:3956885/1‑100 (MQ=11)               ccCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtg          <  1:1170059/99‑3 (MQ=11)               CTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtg          >  2:1986429/1‑99 (MQ=11)               CTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtg          >  2:1964467/1‑99 (MQ=11)                cCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtgc         <  2:4135168/100‑4 (MQ=11)                TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGggc         >  1:812489/1‑98 (MQ=11)                TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACaccgcgg         >  2:3193246/1‑94 (MQ=0)                 CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtgcg        <  2:1795645/101‑5 (MQ=11)                 CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCGtgcg        >  1:444584/1‑97 (MQ=1)                 CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGAGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtgcg        <  1:3571313/101‑5 (MQ=2)                   CCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGggcgcg      >  2:4119558/1‑95 (MQ=2)                   CCCCGCGGGGGCGTGGAGCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtgcgcg      <  2:303094/101‑7 (MQ=0)                    CCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtgcgcgc     >  1:434030/1‑94 (MQ=0)                     CCGGGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtgcgcgcc    <  1:1225931/101‑9 (MQ=0)                     CCGGGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtgcgcgcc    <  2:964770/101‑9 (MQ=0)                       GCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtgcgcgccat  <  2:2343587/101‑11 (MQ=2)                       GCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGtgcgcgccat  <  2:2446692/101‑11 (MQ=2)                                           ||||||||||||||||||||||||||||||||||                                                CGAAACGGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.................................................................................  >  NC_014034/1395355‑1395396 ............................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGCCGCCTATCG  >  NC_014034/1395831‑1395877 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG