New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1395434 =184 (1.300)6 (0.040) 5/134 23.1 0.03 intergenic (+246/‑685) RCAP_rcc01306/RCAP_rcc01307 Cas2 family CRISPR‑associated protein/hypothetical protein
?NC_014034 = 1396471 148 (0.700)coding (353/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

CAAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..............................................................................  <  NC_014034/1395477‑1395434
.............................................................................CCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCCGTGGTGC  <  NC_014034/1396471‑1396427
                                            |||||||||||||||||||||||||||||||||                                             
cgccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGG                       <  2:2926707/91‑1 (MQ=0)
cgccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGG                       <  1:4035443/91‑1 (MQ=0)
 gccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGG                      <  2:541813/92‑1 (MQ=0)
  ccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGG                     >  1:1303194/9‑101 (MQ=0)
  ccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGG                     <  2:374906/93‑1 (MQ=0)
  ccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGG                     >  1:443776/9‑101 (MQ=0)
   catagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGG                    <  2:1341136/94‑1 (MQ=0)
    atagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGG                   <  1:566797/95‑1 (MQ=0)
      agccATGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                 >  1:888322/5‑101 (MQ=0)
      agccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                 >  1:2607577/5‑101 (MQ=1)
      agccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                 <  2:4104286/97‑1 (MQ=1)
      agccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                 <  2:3953913/97‑1 (MQ=1)
       gccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGNCGTTTCGATCCNCGCCCCCGCGGGGGGAGC                >  1:1584022/4‑101 (MQ=1)
       gccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                <  1:1325916/98‑1 (MQ=1)
       gccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                <  2:1011069/98‑1 (MQ=1)
        ccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCG               >  2:1424592/3‑101 (MQ=1)
         cATGTTTGGATCCGCGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA              <  2:3700748/100‑1 (MQ=0)
         cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA              <  2:2553466/100‑1 (MQ=1)
         cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA              <  1:1428498/100‑1 (MQ=1)
         cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA              >  1:3966214/2‑101 (MQ=1)
         cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA              >  2:3549510/2‑101 (MQ=1)
          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGCTCCACGCCCCCGCGGGGGGAGCGgc             >  1:2107128/1‑99 (MQ=1)
          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC             >  1:2467971/1‑101 (MQ=1)
          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC             >  2:3473134/1‑101 (MQ=1)
          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC             <  2:1485737/101‑1 (MQ=1)
          ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC             >  2:2561632/1‑101 (MQ=1)
           TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg            >  1:1848584/1‑100 (MQ=11)
           TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACg            >  1:2989642/1‑100 (MQ=11)
            GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgg           >  2:651385/1‑99 (MQ=1)
            GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgg           >  2:1614915/1‑99 (MQ=1)
             TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGC          <  2:143458/101‑1 (MQ=1)
             TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGC          <  1:3178015/101‑1 (MQ=1)
              TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCg         >  2:2383602/1‑100 (MQ=1)
              TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCg         >  1:3474012/1‑100 (MQ=1)
                CGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgat       <  1:1670004/101‑4 (MQ=1)
                 GATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatg      <  1:4200071/101‑5 (MQ=1)
                   TCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatgtg    <  1:3339473/101‑7 (MQ=1)
                     CACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatgtgac  >  1:2816276/1‑93 (MQ=0)
                     CACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCgatgtgac  <  1:2526391/101‑9 (MQ=0)
                                            |||||||||||||||||||||||||||||||||                                             
CAAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC..............................................................................  <  NC_014034/1395477‑1395434
.............................................................................CCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGCCGTGGTGC  <  NC_014034/1396471‑1396427

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG