New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395434 =	182 (1.300)	43 (0.310)	10/132	18.8	0.22	intergenic (+246/‑685)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1397199	122 (0.580)					coding (1081/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CAAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.....................................................................................................................................  <  NC_014034/1395477‑1395434 ..............................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCACGGTCGAAGACATGTGGCGCGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGA  <  NC_014034/1397199‑1397101                                             ||||||||||||||||||||||||||||||||||                                                                                                    cgccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGG                                                                              <  2:2926707/91‑1 (MQ=0) cgccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGG                                                                              <  1:4035443/91‑1 (MQ=0)  gccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGG                                                                             <  2:541813/92‑1 (MQ=0)   ccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGG                                                                            >  1:1303194/9‑101 (MQ=0)   ccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGG                                                                            <  2:374906/93‑1 (MQ=0)   ccatagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGG                                                                            >  1:443776/9‑101 (MQ=0)    catagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGG                                                                           <  2:1341136/94‑1 (MQ=0)     atagccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGG                                                                          <  1:566797/95‑1 (MQ=0)       agccATGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                        >  1:888322/5‑101 (MQ=0)       agccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                        <  2:4104286/97‑1 (MQ=1)       agccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                        <  2:3953913/97‑1 (MQ=1)       agccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                        >  1:2607577/5‑101 (MQ=1)        gccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGNCGTTTCGATCCNCGCCCCCGCGGGGGGAGC                                                                       >  1:1584022/4‑101 (MQ=1)        gccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                       <  1:1325916/98‑1 (MQ=1)        gccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                       <  2:1011069/98‑1 (MQ=1)         ccATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                      >  2:1424592/3‑101 (MQ=1)          cATGTTTGGATCCGCGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                     <  2:3700748/100‑1 (MQ=0)          cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                     <  1:1428498/100‑1 (MQ=1)          cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                     >  1:3966214/2‑101 (MQ=1)          cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                     >  2:3549510/2‑101 (MQ=1)          cATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                     <  2:2553466/100‑1 (MQ=1)           ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGCTCCACGCCCCCGCGGGGGGAGCGgc                                                                    >  1:2107128/1‑99 (MQ=1)           ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                    >  1:2467971/1‑101 (MQ=1)           ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                    >  2:3473134/1‑101 (MQ=1)           ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                    <  2:1485737/101‑1 (MQ=1)           ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                    >  2:2561632/1‑101 (MQ=1)            TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                   >  1:1848584/1‑101 (MQ=11)            TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                   >  1:2989642/1‑101 (MQ=11)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGG                                                                  >  2:1614915/1‑101 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGG                                                                  >  2:651385/1‑101 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGC                                                                 <  1:3178015/101‑1 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGC                                                                 <  2:143458/101‑1 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCG                                                                >  2:2383602/1‑101 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCG                                                                >  1:3474012/1‑101 (MQ=1)                 CGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGat                                                              <  1:1670004/101‑3 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatg                                                             <  1:4200071/101‑4 (MQ=1)                    TCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGCGCGACGGCGatggg                                                           >  1:2459914/1‑96 (MQ=0)                    TCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtg                                                           <  1:3339473/101‑6 (MQ=1)                      CACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtgac                                                         >  1:2816276/1‑94 (MQ=0)                      CACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtgac                                                         <  1:2526391/101‑8 (MQ=0)                       cCGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtgacc                                                        <  2:869048/100‑9 (MQ=0)                         GCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtgaccag                                                      >  2:2193784/1‑91 (MQ=0)                         GCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtgaccag                                                      >  1:2469609/1‑91 (MQ=0)                                                                             cCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCACGGTCGAAGACATGTGGCGCGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGA  <  2:3888412/100‑1 (MQ=1)                                             ||||||||||||||||||||||||||||||||||                                                                                                    CAAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.....................................................................................................................................  <  NC_014034/1395477‑1395434 ..............................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCACGGTCGAAGACATGTGGCGCGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGA  <  NC_014034/1397199‑1397101 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG