New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395434 =	179 (1.300)	42 (0.310)	9/130	19.3	0.22	intergenic (+246/‑685)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1397399	120 (0.570)					coding (1281/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GCCAAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC......................................................................................................................................  <  NC_014034/1395479‑1395434 .................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCCGTCTGGCGTGGGGCGCGAAGGCTGTAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGCGAC  <  NC_014034/1397399‑1397301                                               |||||||||||||||||||||||||||||||||||                                                                                                    atttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGC                                                                                 <  2:4050556/91‑1 (MQ=0)  tttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCG                                                                                >  1:1495540/10‑101 (MQ=0)   ttgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGG                                                                               <  2:2891494/93‑1 (MQ=0)    tgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGG                                                                              >  1:2699718/8‑101 (MQ=0)    tgatcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGG                                                                              >  1:3298951/8‑101 (MQ=0)      atcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGG                                                                            >  1:1085694/6‑101 (MQ=1)      atcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGG                                                                            >  2:3743034/6‑101 (MQ=1)       tcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                                           <  2:4146519/97‑1 (MQ=1)       tcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                                           <  1:2880808/97‑1 (MQ=1)       tcatCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                                           <  1:3048408/97‑1 (MQ=1)        catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                                          >  2:1123935/4‑100 (MQ=1)        catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                                          >  2:543381/4‑100 (MQ=1)        catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                                          >  2:1819103/4‑100 (MQ=1)        catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                                          >  2:2424900/4‑100 (MQ=1)        catCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                                          <  1:4018302/98‑1 (MQ=1)         atCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         >  2:1734567/3‑101 (MQ=1)         atCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         <  2:606040/99‑1 (MQ=1)           cggTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCTCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                       <  2:53898/98‑1 (MQ=1)           CGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGAGTTTCGATCCACGCCCCCGCGGGGGNGGCn                                                                       >  1:3196898/1‑100 (MQ=0)            GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCTGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                      <  1:1500181/101‑1 (MQ=1)            GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                      >  1:3421885/1‑101 (MQ=1)            GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                      >  1:595657/1‑101 (MQ=1)             gTGTGTCGATCCACGCCGCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                     <  2:3610652/100‑1 (MQ=0)             ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                     >  1:3674910/1‑101 (MQ=1)             ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                     <  1:101328/101‑1 (MQ=1)             ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                     <  1:1932008/101‑1 (MQ=1)              ttTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                    <  2:3298710/99‑1 (MQ=1)                TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGca                                                                  >  1:3477866/1‑99 (MQ=1)                TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGca                                                                  <  1:2362919/101‑3 (MQ=1)                 TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcag                                                                 >  1:4104645/1‑98 (MQ=1)                 TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcag                                                                 <  2:1804106/101‑4 (MQ=1)                  TCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagc                                                                >  1:3872994/1‑97 (MQ=1)                   CGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcg                                                               >  2:2039215/1‑96 (MQ=1)                    GATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcgg                                                              >  2:3387133/1‑95 (MQ=1)                     ATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggc                                                             <  2:1021792/101‑8 (MQ=1)                     ATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggc                                                             >  1:3901565/1‑94 (MQ=1)                     ATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggc                                                             >  2:2750288/1‑94 (MQ=1)                       CCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggcac                                                           <  1:1804649/101‑10 (MQ=1)                        CACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggcacc                                                          <  1:2920285/101‑11 (MQ=1)                        CACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggcacc                                                          <  1:3257903/101‑11 (MQ=1)                        CACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggcacc                                                          <  2:3624233/101‑11 (MQ=1)                        CACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggcacc                                                          <  2:3429367/101‑11 (MQ=1)                                                                                GTGTTGCGATCCACGCCCCCGCGGGGGGAGCGACGTCCGTCTGGCGTGGGGCGCGAAGGCTGTAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGGGAC  <  2:918333/101‑1 (MQ=0)                                               |||||||||||||||||||||||||||||||||||                                                                                                    GCCAAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC......................................................................................................................................  <  NC_014034/1395479‑1395434 .................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCCGTCTGGCGTGGGGCGCGAAGGCTGTAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGCGAC  <  NC_014034/1397399‑1397301 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG