New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395832 =	129 (0.940)	38 (0.280)	15/130	15.4	0.20	intergenic (+644/‑287)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1396802	181 (0.850)					coding (684/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

ATAGGCGGCGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...............................................................................  <  NC_014034/1395875‑1395832 ...............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAAGGGCATCG  <  NC_014034/1396802‑1396759                                             |||||||||||||||||||||||||||||||||||                                             ggaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGG                        >  1:1521092/6‑101 (MQ=255)  gaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGG                       >  2:55989/5‑101 (MQ=255)  gaacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGG                       <  2:3727061/97‑1 (MQ=255)   aacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGG                      >  1:381193/4‑101 (MQ=9)   aacCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGG                      >  1:3733122/4‑101 (MQ=9)    acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG                     <  2:3029435/99‑1 (MQ=9)    acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG                     >  1:2389571/3‑101 (MQ=9)    acCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG                     <  2:3922592/99‑1 (MQ=9)     cCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG                    >  1:1143593/2‑101 (MQ=9)     cCGGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG                    <  1:1183267/100‑1 (MQ=9)      CGGCACAGTTTCGATCCACGCGCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGA                   >  1:2402867/1‑101 (MQ=9)       GGCACAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAG                  >  1:361102/1‑101 (MQ=2)        gcaCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  2:164189/98‑1 (MQ=0)        gcaCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:4226149/98‑1 (MQ=0)        gcaCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:4108099/4‑101 (MQ=0)         caCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  1:4122007/3‑101 (MQ=1)         caCAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                <  2:566769/99‑1 (MQ=1)           CAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              >  1:2323237/1‑101 (MQ=1)            AGTTTCGATCCCCGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT             <  2:1708598/101‑1 (MQ=0)            AGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACc             >  2:1034304/1‑100 (MQ=1)            AGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT             >  1:3098174/1‑101 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTC            <  1:1112130/101‑1 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCc           >  2:12812/1‑100 (MQ=1)                TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgt         >  2:1998846/1‑98 (MQ=0)                TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgt         <  2:1872176/101‑4 (MQ=0)                TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgt         >  1:776596/1‑98 (MQ=0)                TCGATCCACGCCCCCGCGGGGGGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgc         >  2:2557425/1‑98 (MQ=1)                 CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        <  2:1770830/101‑5 (MQ=0)                 CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        >  1:63788/1‑97 (MQ=0)                 CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        >  1:1596964/1‑97 (MQ=0)                 CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        >  2:777493/1‑97 (MQ=0)                  GATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcc       >  2:1531513/1‑96 (MQ=0)                  GATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcc       <  1:710791/101‑6 (MQ=0)                   ATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcccgtccc      >  1:3070347/1‑93 (MQ=0)                   ATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtccc      >  2:3074343/1‑95 (MQ=0)                    TCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtccca     >  1:3481420/1‑94 (MQ=0)                     CCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcccaa    <  1:964861/101‑9 (MQ=0)                       ACGCCCCCGCGGGGGGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcccaaac  >  1:1732935/1‑91 (MQ=0)                                             |||||||||||||||||||||||||||||||||||                                             ATAGGCGGCGCAGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...............................................................................  <  NC_014034/1395875‑1395832 ...............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAAGGGCATCG  <  NC_014034/1396802‑1396759 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG