New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395899 =	141 (1.020)	56 (0.410)	8/130	20.1	0.28	intergenic (+711/‑220)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1396737	143 (0.680)					coding (619/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CATGAACGCATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.............................................................................  <  NC_014034/1395942‑1395899 ...............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATGACGGAT  <  NC_014034/1396737‑1396696                                             |||||||||||||||||||||||||||||||||||                                           cgagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGG                      >  2:942906/8‑101 (MQ=0) cgagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGG                      >  2:1277634/8‑101 (MQ=0) cgagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGG                      >  1:733245/8‑101 (MQ=0)  gagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGG                     >  2:641125/7‑101 (MQ=0)   agccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGG                    >  2:2518090/6‑101 (MQ=0)    gccaGCATAGTTTCGATNCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGG                   <  2:561563/97‑1 (MQ=0)    gccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGG                   >  2:2618532/5‑101 (MQ=0)    gccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGG                   >  1:277709/5‑101 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                  <  2:2425070/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                  <  1:2602771/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                  <  1:896318/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                  <  1:3345775/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGGGTTTCGATCCACGCCCCCGCGGGGGG                  >  2:1938656/4‑101 (MQ=0)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                 >  1:3625092/3‑100 (MQ=0)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                 >  2:1035278/3‑101 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                 >  1:576357/3‑101 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                 <  1:2133854/99‑1 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                 <  1:3319607/99‑1 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                 >  1:1225729/3‑101 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                >  2:3393013/2‑101 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                >  2:1970063/2‑101 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                <  1:3318772/100‑1 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                <  2:863225/100‑1 (MQ=1)       CGCATAGTTTCGATCCACGCCCCGGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                <  2:3998412/101‑1 (MQ=0)       CGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                <  2:3965954/101‑1 (MQ=1)       CGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                <  2:1362953/101‑1 (MQ=1)        GCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC               <  1:4004352/101‑1 (MQ=1)         CATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGCGCG              >  2:2554911/1‑101 (MQ=0)         CATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG              <  1:3801984/101‑1 (MQ=1)         CATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGGGTTTCGATCCACGCCCCCGCGGGGGGGGCG              >  2:71848/1‑101 (MQ=0)          ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA             >  2:58969/4‑101 (MQ=1)          ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA             <  1:1988317/98‑1 (MQ=1)           taGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC            >  2:3126514/3‑101 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACca          >  1:1526138/1‑99 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACca          <  1:3003947/101‑3 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac         >  2:1356493/1‑98 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac         <  2:3552237/101‑4 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac         <  1:2473691/101‑4 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac         <  2:2618523/101‑4 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacc        >  2:3191313/1‑97 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacc        <  2:665532/101‑5 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacc        <  1:3977242/101‑5 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacc        >  1:3373446/1‑97 (MQ=1)                TCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccg       >  1:3729463/1‑96 (MQ=1)                 CGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccgg      <  1:2815098/101‑7 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggc     >  1:1592516/1‑94 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggc     <  1:1120777/101‑8 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcc    >  2:1984778/1‑93 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcc    <  1:3540112/101‑9 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAccggtc    >  2:3695594/1‑95 (MQ=1)                    TCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcct   <  1:3435224/101‑10 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcctt  <  2:1505818/101‑11 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcctt  >  1:2395909/1‑91 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcctt  <  1:641202/101‑11 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcctt  <  2:459927/101‑11 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcctt  <  1:1035369/101‑11 (MQ=0)                                             |||||||||||||||||||||||||||||||||||                                           CATGAACGCATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC.............................................................................  <  NC_014034/1395942‑1395899 ...............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATGACGGAT  <  NC_014034/1396737‑1396696 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG