New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395899 =	141 (1.020)	44 (0.320)	10/130	18.6	0.24	intergenic (+711/‑220)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1397132	137 (0.650)					coding (1014/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

TTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGTCCACTGCCCGACGTAGGCCATGAACGCATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1395995‑1395899 ....................................................................................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGACATGTGCTCG  <  NC_014034/1397132‑1397088                                                                                                  |||||||||||||||||||||||||||||||||||                                              TTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGTCCACTGCCCGACGTAGGCCATGAACGCATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCG                                                                              >  1:2183829/1‑101 (MQ=1)                                                     cggtgtcaGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGC                          <  1:3948093/93‑1 (MQ=0)                                                     cggtgtcaGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGC                          >  2:3764456/9‑101 (MQ=0)                                                      ggtgtcaGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCG                         >  2:3801100/8‑101 (MQ=0)                                                      ggtgtcaGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCG                         >  2:1064008/8‑101 (MQ=0)                                                        tgtcaGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGG                       <  1:509635/96‑1 (MQ=0)                                                        tgtcaGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGG                       >  1:3223744/6‑101 (MQ=0)                                                        tgtcaGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGG                       >  1:3862991/6‑101 (MQ=0)                                                         gtcaGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGG                      <  1:3279536/97‑1 (MQ=0)                                                          tcaGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGG                     <  2:1438207/98‑1 (MQ=0)                                                           caGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGG                    <  2:2927319/99‑1 (MQ=1)                                                           caGCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGG                    >  1:2122348/3‑101 (MQ=1)                                                             GCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAG                  <  2:2861610/101‑1 (MQ=1)                                                              cagCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGCGC                 >  1:648318/4‑101 (MQ=0)                                                              cagCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:639350/4‑101 (MQ=1)                                                              cagCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:2438902/98‑1 (MQ=1)                                                               agCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  2:896233/3‑101 (MQ=1)                                                                 CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              <  2:3377662/101‑1 (MQ=1)                                                                  GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             <  2:3618542/101‑1 (MQ=1)                                                                  GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             >  2:292905/1‑101 (MQ=1)                                                                  GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             <  2:836257/101‑1 (MQ=1)                                                                   TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA            <  1:1696140/101‑1 (MQ=1)                                                                   TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA            <  2:4067721/101‑1 (MQ=1)                                                                    TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAt           <  2:3253669/101‑2 (MQ=1)                                                                    TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAt           <  2:2043874/101‑2 (MQ=1)                                                                    TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAt           <  2:1583620/101‑2 (MQ=1)                                                                    TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAt           <  1:3139733/101‑2 (MQ=1)                                                                     gCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAta          <  1:512400/100‑3 (MQ=1)                                                                     TCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAta          <  2:2813122/101‑3 (MQ=1)                                                                      CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCCGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCAGCGGGGGGAGCGACGAtag         <  1:3667340/101‑4 (MQ=0)                                                                      CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtag         >  2:3909026/1‑98 (MQ=1)                                                                      CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtaa         >  2:512343/1‑98 (MQ=1)                                                                       GATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagc        >  1:4103861/1‑97 (MQ=1)                                                                       GATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagc        >  2:3689584/1‑97 (MQ=1)                                                                        ATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcc       >  2:2943274/1‑96 (MQ=1)                                                                        ATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcc       >  1:1265166/1‑96 (MQ=1)                                                                          CCACGCCCCCGCGGGGGGAGCGACGCCGCATATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccg     >  2:1775742/1‑94 (MQ=0)                                                                          CCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccg     >  1:1363053/1‑94 (MQ=0)                                                                            ACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgcc   >  2:3829957/1‑92 (MQ=0)                                                                            ACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgcc   <  1:1397651/101‑10 (MQ=0)                                                                             CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgccg  <  2:2020213/101‑11 (MQ=0)                                                                             CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgccg  <  1:886214/101‑11 (MQ=0)                                                                             CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgccg  >  2:4185976/1‑91 (MQ=0)                                                                             CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgccg  <  1:794005/101‑11 (MQ=0)                                                                             CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgccg  >  2:539692/1‑91 (MQ=0)                                                                                                  |||||||||||||||||||||||||||||||||||                                              TTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGTCCACTGCCCGACGTAGGCCATGAACGCATCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1395995‑1395899 ....................................................................................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGACATGTGCTCG  <  NC_014034/1397132‑1397088 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG