New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396198126 (0.920)45 (0.330) 9/130 19.3 0.25 coding (80/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1396235 = 141 (0.670)coding (117/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

GCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..............................................................................  >  NC_014034/1396152‑1396198
..................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCAGGTCAGC  >  NC_014034/1396235‑1396277
                                               |||||||||||||||||||||||||||||||||||                                           
ttctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGG                          >  1:1200437/10‑101 (MQ=0)
ttctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGG                          >  1:173528/10‑101 (MQ=0)
 tctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGC                         >  2:3497708/9‑101 (MQ=0)
 tctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGC                         >  2:2565736/9‑101 (MQ=0)
  ctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCG                        >  2:60117/8‑101 (MQ=0)
  ctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCG                        <  1:2510186/94‑1 (MQ=0)
    ggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                      >  1:3257903/6‑101 (MQ=1)
    ggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                      >  1:2920285/6‑101 (MQ=1)
    ggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                      >  2:3429367/6‑101 (MQ=1)
    ggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                      >  2:3624233/6‑101 (MQ=1)
     gtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGG                     >  1:1804649/5‑101 (MQ=1)
       gcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  2:2750288/99‑1 (MQ=1)
       gcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   >  2:1021792/3‑101 (MQ=1)
       gcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                   <  1:3901565/99‑1 (MQ=1)
        cCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                  <  2:3387133/100‑1 (MQ=1)
         CGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  2:2039215/101‑1 (MQ=1)
          GCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                <  1:3872994/101‑1 (MQ=1)
           CTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               >  2:1804106/1‑101 (MQ=1)
           CTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA               <  1:4104645/101‑1 (MQ=1)
            TGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              >  1:2362919/1‑101 (MQ=1)
            TGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              <  1:3477866/101‑1 (MQ=1)
              CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAaa            >  2:3298710/1‑99 (MQ=1)
               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt           <  1:3674910/101‑2 (MQ=1)
               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt           >  1:101328/1‑100 (MQ=1)
               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt           >  1:1932008/1‑100 (MQ=1)
               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGCGGCGTGGATCGACACAc           >  2:3610652/1‑100 (MQ=0)
                TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtc          <  1:595657/101‑3 (MQ=1)
                TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtc          <  1:3421885/101‑3 (MQ=1)
                TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACAGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtc          >  1:1500181/1‑99 (MQ=1)
                 ngccnCCCCCGCGGGGGCGTGGATCGAAACTCCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcg         <  1:3196898/96‑4 (MQ=0)
                 CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGAGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAccg         >  2:53898/1‑98 (MQ=1)
                   CTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgat       >  2:606040/1‑96 (MQ=1)
                   CTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgat       <  2:1734567/101‑6 (MQ=1)
                    cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatg      <  2:1123935/100‑7 (MQ=1)
                    cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatg      <  2:1819103/100‑7 (MQ=1)
                    cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatg      <  2:2424900/100‑7 (MQ=1)
                    cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatg      <  2:543381/100‑7 (MQ=1)
                    TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatg      >  1:4018302/1‑95 (MQ=1)
                     CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatga     >  2:4146519/1‑94 (MQ=1)
                     CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatga     >  1:2880808/1‑94 (MQ=1)
                     CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatga     >  1:3048408/1‑94 (MQ=1)
                      CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatgat    <  1:1085694/101‑9 (MQ=1)
                      CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatgat    <  2:3743034/101‑9 (MQ=1)
                        CCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatgatca  <  1:2699718/101‑11 (MQ=0)
                        CCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtcgatgatca  <  1:3298951/101‑11 (MQ=0)
                                               |||||||||||||||||||||||||||||||||||                                           
GCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..............................................................................  >  NC_014034/1396152‑1396198
..................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCAGGTCAGC  >  NC_014034/1396235‑1396277

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG