New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396198126 (0.920)42 (0.310) 9/130 19.3 0.24 coding (80/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1396771 = 143 (0.680)coding (653/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

GCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC............................................................................  >  NC_014034/1396152‑1396198
..................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGTGTGGAT  >  NC_014034/1396771‑1396811
                                               |||||||||||||||||||||||||||||||||||                                         
ttctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGG                        >  1:1200437/10‑101 (MQ=0)
ttctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGG                        >  1:173528/10‑101 (MQ=0)
 tctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGC                       >  2:3497708/9‑101 (MQ=0)
 tctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGC                       >  2:2565736/9‑101 (MQ=0)
  ctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCG                      >  2:60117/8‑101 (MQ=0)
  ctggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCG                      <  1:2510186/94‑1 (MQ=0)
    ggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                    >  2:3624233/6‑101 (MQ=1)
    ggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                    >  2:3429367/6‑101 (MQ=1)
    ggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                    >  1:2920285/6‑101 (MQ=1)
    ggtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                    >  1:3257903/6‑101 (MQ=1)
     gtgcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGG                   >  1:1804649/5‑101 (MQ=1)
       gcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                 >  2:1021792/3‑101 (MQ=1)
       gcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                 <  1:3901565/99‑1 (MQ=1)
       gcCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                 <  2:2750288/99‑1 (MQ=1)
        cCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                <  2:3387133/100‑1 (MQ=1)
         CGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCG               <  2:2039215/101‑1 (MQ=1)
          GCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA              <  1:3872994/101‑1 (MQ=1)
           CTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA             <  1:4104645/101‑1 (MQ=1)
           CTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA             >  2:1804106/1‑101 (MQ=1)
            TGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA            <  1:3477866/101‑1 (MQ=1)
            TGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA            >  1:2362919/1‑101 (MQ=1)
              CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAaa          >  2:3298710/1‑99 (MQ=1)
               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat         >  1:101328/1‑99 (MQ=1)
               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat         <  1:3674910/101‑3 (MQ=1)
               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACat         >  1:1932008/1‑99 (MQ=1)
               GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGCGGCGTGGATCGACACac         >  2:3610652/1‑99 (MQ=0)
                TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatc        <  1:595657/101‑4 (MQ=1)
                TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatc        <  1:3421885/101‑4 (MQ=1)
                TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACAGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatc        >  1:1500181/1‑98 (MQ=1)
                 CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGAGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaccg       >  2:53898/1‑97 (MQ=1)
                   CTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgat     >  2:606040/1‑95 (MQ=1)
                   CTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgat     <  2:1734567/101‑7 (MQ=1)
                    cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatg    <  2:2424900/100‑8 (MQ=1)
                    cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatg    <  2:1819103/100‑8 (MQ=1)
                    cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatg    <  2:543381/100‑8 (MQ=1)
                    cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatg    <  2:1123935/100‑8 (MQ=1)
                    TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatg    >  1:4018302/1‑94 (MQ=1)
                     CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatga   >  1:2880808/1‑93 (MQ=1)
                     CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatga   >  1:3048408/1‑93 (MQ=1)
                     CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatga   >  2:4146519/1‑93 (MQ=1)
                      CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatgat  <  1:1085694/101‑10 (MQ=1)
                      CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACatcgatgat  <  2:3743034/101‑10 (MQ=1)
                                               |||||||||||||||||||||||||||||||||||                                         
GCGCCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC............................................................................  >  NC_014034/1396152‑1396198
..................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGTGTGGAT  >  NC_014034/1396771‑1396811

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG