New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396204142 (0.970)41 (0.280) 14/138 17.0 0.23 coding (86/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1396902 = 126 (0.590)coding (784/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

CACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCG.........................................................................  >  NC_014034/1396159‑1396204
.............................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGC  >  NC_014034/1396902‑1396943
                                              |||||||||||||||||||||||||||||||                                          
ggcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTG                    <  2:2892716/95‑1 (MQ=0)
ggcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTG                    >  1:2425076/7‑101 (MQ=0)
 gcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGG                   <  2:3595977/96‑1 (MQ=0)
  cccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGA                  >  1:227575/5‑101 (MQ=0)
   ccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGAT                 >  1:3729417/4‑101 (MQ=0)
   ccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGAT                 <  1:1292728/98‑1 (MQ=0)
    cgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATC                >  2:1510153/3‑101 (MQ=1)
    cgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATC                <  1:1021152/99‑1 (MQ=1)
     gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCG               >  1:695441/2‑101 (MQ=1)
      GCGTCGNTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA              <  1:647286/101‑1 (MQ=1)
      GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA              >  2:3674657/1‑101 (MQ=1)
      GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA              <  2:463520/101‑1 (MQ=1)
       CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAGCCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA             <  1:1591891/101‑1 (MQ=0)
       CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCTGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA             >  2:4124015/1‑101 (MQ=1)
       CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA             <  2:1262196/101‑1 (MQ=1)
        GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA            >  1:2522211/1‑101 (MQ=1)
        GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA            <  1:547218/101‑1 (MQ=1)
        GTCGCCCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA            <  2:1988641/101‑1 (MQ=0)
          CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGCTCGAAACA          >  2:1025351/1‑101 (MQ=0)
          CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCTAAACA          <  2:722711/101‑1 (MQ=0)
          CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc          >  2:3229790/1‑100 (MQ=1)
          CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA          <  1:1649190/101‑1 (MQ=1)
          CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA          >  2:3415473/1‑101 (MQ=1)
          CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA          >  2:1293861/1‑101 (MQ=1)
          CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA          <  2:2531582/101‑1 (MQ=1)
           GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc         >  1:626235/1‑100 (MQ=1)
           GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc         <  1:2510536/101‑2 (MQ=1)
           GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc         >  2:1630133/1‑100 (MQ=1)
           GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc         >  2:2534412/1‑100 (MQ=1)
            CTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAcc        >  2:1445973/1‑99 (MQ=1)
            CTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAcc        >  1:736825/1‑99 (MQ=1)
             TCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC       <  1:1226605/101‑1 (MQ=0)
              CCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCc      <  1:1220604/101‑2 (MQ=2)
               CCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgcctcg     >  2:3956960/1‑95 (MQ=0)
                CCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCcga    <  2:3903826/101‑4 (MQ=12)
                 CCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCcgaa   >  2:2439854/1‑97 (MQ=12)
                 CCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCcgaa   <  1:3275955/101‑5 (MQ=12)
                 CCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCcgaa   >  1:2252523/1‑97 (MQ=12)
                  CCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCcgaac  <  1:2855119/101‑6 (MQ=12)
                  CCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCcgaac  <  1:4022557/101‑6 (MQ=12)
                  CCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCcgaac  <  1:143529/101‑6 (MQ=12)
                                              |||||||||||||||||||||||||||||||                                          
CACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCG.........................................................................  >  NC_014034/1396159‑1396204
.............................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGC  >  NC_014034/1396902‑1396943

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG