New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396204	142 (0.990)	44 (0.310)	18/136	14.5	0.22	coding (86/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397500 =	172 (0.810)					coding (1382/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCG............................................................................  >  NC_014034/1396159‑1396204 ..............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATG  >  NC_014034/1397500‑1397543                                               ||||||||||||||||||||||||||||||||                                             ggcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTG                       >  1:2425076/7‑101 (MQ=0) ggcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTG                       <  2:2892716/95‑1 (MQ=0)  gcccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGG                      <  2:3595977/96‑1 (MQ=0)   cccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGA                     >  1:227575/5‑101 (MQ=0)    ccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGAT                    >  1:3729417/4‑101 (MQ=0)    ccgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  1:1292728/98‑1 (MQ=0)     cgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  2:1510153/3‑101 (MQ=1)     cgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  1:1021152/99‑1 (MQ=1)      gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  >  1:695441/2‑101 (MQ=1)       GCGTCGNTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  1:647286/101‑1 (MQ=1)       GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 >  2:3674657/1‑101 (MQ=1)       GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  2:463520/101‑1 (MQ=1)        CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAGCCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  1:1591891/101‑1 (MQ=0)        CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCTGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  2:4124015/1‑101 (MQ=1)        CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  2:1262196/101‑1 (MQ=1)         GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  1:2522211/1‑101 (MQ=1)         GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  1:547218/101‑1 (MQ=1)         GTCGCCCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  2:1988641/101‑1 (MQ=0)           CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGCTCGAAACA             >  2:1025351/1‑101 (MQ=0)           CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCTAAACA             <  2:722711/101‑1 (MQ=0)           CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACc             >  2:3229790/1‑100 (MQ=1)           CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA             <  1:1649190/101‑1 (MQ=1)           CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA             >  2:3415473/1‑101 (MQ=1)           CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA             >  2:1293861/1‑101 (MQ=1)           CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA             <  2:2531582/101‑1 (MQ=1)            GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc            >  2:2534412/1‑100 (MQ=1)            GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc            <  1:2510536/101‑2 (MQ=1)            GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc            >  2:1630133/1‑100 (MQ=1)            GCTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAc            >  1:626235/1‑100 (MQ=1)             CTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAcc           >  2:1445973/1‑99 (MQ=1)             CTCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAcc           >  1:736825/1‑99 (MQ=1)              TCCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCC          <  1:1226605/101‑1 (MQ=0)               CCCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCC         <  1:1220604/101‑1 (MQ=2)                CCCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACgcctcg        >  2:3956960/1‑95 (MQ=0)                 CCCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGA       <  2:3903826/101‑1 (MQ=12)                  CCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAa      >  2:2439854/1‑100 (MQ=12)                  CCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAa      <  1:3275955/101‑2 (MQ=12)                  CCCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAa      >  1:2252523/1‑100 (MQ=12)                   CCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAac     <  1:2855119/101‑3 (MQ=12)                   CCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAac     <  1:4022557/101‑3 (MQ=12)                   CCGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAac     <  1:143529/101‑3 (MQ=12)                    CGCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAacc    >  2:2057144/1‑98 (MQ=255)                     GCGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAacct   <  1:4071580/101‑5 (MQ=255)                      CGGGGGCGTGGATCGAAACCCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAacctg  <  2:1381784/101‑6 (MQ=255)                                               ||||||||||||||||||||||||||||||||                                             CACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCG............................................................................  >  NC_014034/1396159‑1396204 ..............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATG  >  NC_014034/1397500‑1397543 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG