New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1396235 =141 (1.020)41 (0.300) 11/130 17.9 0.22 coding (117/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1396738 144 (0.680)coding (620/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

CGGCTGACCTGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1396279‑1396235
................................................................................GGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATGACGGATCG  <  NC_014034/1396738‑1396694
                                             |||||||||||||||||||||||||||||||||||                                             
cggtcaagCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGC                          >  1:2475665/9‑101 (MQ=16)
   tcaagCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGG                       >  1:3736459/6‑101 (MQ=18)
     aagCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGG                     <  1:877473/98‑1 (MQ=18)
      agCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGG                    >  1:162541/3‑101 (MQ=33)
      agCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGG                    <  2:2389395/99‑1 (MQ=33)
       gCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                   <  2:1754110/100‑1 (MQ=32)
       gCTGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                   <  1:2246081/100‑1 (MQ=32)
         tgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGC                 >  1:4474/4‑101 (MQ=11)
         tgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGCGC                 >  2:3236630/4‑101 (MQ=11)
         tgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:632701/98‑1 (MQ=11)
         tgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  1:2476252/4‑101 (MQ=11)
          gaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCG                <  2:1806113/99‑1 (MQ=1)
          gaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCG                <  2:448201/99‑1 (MQ=1)
           aTGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGA               <  1:1181134/100‑1 (MQ=1)
            TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGTGAC              >  1:3797446/1‑101 (MQ=1)
            TGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              <  1:2729630/101‑1 (MQ=1)
             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             <  2:2306886/101‑1 (MQ=1)
             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             >  1:2016934/1‑101 (MQ=1)
              TTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA            >  2:1052830/1‑101 (MQ=1)
               TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAT           <  1:1854199/101‑1 (MQ=1)
               TTCGACCCCCGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAT           <  1:42687/101‑1 (MQ=0)
                TCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATc          <  2:2944841/101‑2 (MQ=1)
                TCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCAACGACCGGGCCGCCAGCCCTCATAGGATTCGATCCACGTCCCCGCGGGGGGAGCGACGATG          >  2:3165394/1‑101 (MQ=0)
                 CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcg         >  2:4150910/1‑99 (MQ=1)
                 CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcg         <  1:3087753/101‑3 (MQ=1)
                  GATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATCGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcga        >  1:2672350/1‑98 (MQ=0)
                  GATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcga        >  2:1766922/1‑98 (MQ=1)
                  GATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcga        >  1:3930233/1‑98 (MQ=1)
                   ATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgag       >  2:54917/1‑97 (MQ=1)
                   ATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgag       >  1:1184727/1‑97 (MQ=1)
                    TCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGATcgagc      >  2:2341545/1‑96 (MQ=0)
                     cccCGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgagcc     <  1:3226153/98‑7 (MQ=0)
                     CCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgagcc     >  1:675236/1‑95 (MQ=0)
                     CCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgagcc     <  1:3549763/101‑7 (MQ=0)
                     CCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgagcc     >  1:1908074/1‑95 (MQ=0)
                      CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgagccc    >  2:2956261/1‑94 (MQ=0)
                      CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgagccc    <  2:3260950/101‑8 (MQ=0)
                      CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgagccc    <  2:4157795/101‑8 (MQ=0)
                      CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgagccc    >  2:842847/1‑94 (MQ=0)
                        CGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgagcgaca  <  2:3797186/101‑10 (MQ=0)
                        CGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATcgagcccgg  >  2:3615540/1‑92 (MQ=0)
                                             |||||||||||||||||||||||||||||||||||                                             
CGGCTGACCTGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1396279‑1396235
................................................................................GGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATGACGGATCG  <  NC_014034/1396738‑1396694

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG