New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396302 =	140 (1.020)	29 (0.210)	5/130	22.6	0.15	coding (184/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1396802	181 (0.850)					coding (684/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CACTGCTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...............................................................................  <  NC_014034/1396341‑1396302 ...........................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAAGGGCATCG  <  NC_014034/1396802‑1396759                                         |||||||||||||||||||||||||||||||||||                                             ccggcacaGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG                    >  1:1143593/9‑101 (MQ=9) ccggcacaGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG                    <  1:1183267/93‑1 (MQ=9)   ggcacaGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAG                  >  1:361102/7‑101 (MQ=2)    gcacaGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:4108099/6‑101 (MQ=0)    gcacaGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:4226149/96‑1 (MQ=0)    gcacaGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  2:164189/96‑1 (MQ=0)     cacaGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                <  2:566769/97‑1 (MQ=1)     cacaGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  1:4122007/5‑101 (MQ=1)       caGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              >  1:2323237/3‑101 (MQ=1)        aGTTTCGATCCCCGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT             <  2:1708598/100‑1 (MQ=0)        aGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACc             >  2:1034304/2‑100 (MQ=1)        aGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT             >  1:3098174/2‑101 (MQ=1)         GTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTC            <  1:1112130/101‑1 (MQ=1)          TTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCc           >  2:12812/1‑100 (MQ=1)            TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgt         >  2:1998846/1‑98 (MQ=0)            TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgt         <  2:1872176/101‑4 (MQ=0)            TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgt         >  1:776596/1‑98 (MQ=0)            TCGATCCACGCCCCCGCGGGGGGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgc         >  2:2557425/1‑98 (MQ=1)             CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        >  1:63788/1‑97 (MQ=0)             CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        <  2:1770830/101‑5 (MQ=0)             CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        >  1:1596964/1‑97 (MQ=0)             CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        >  2:777493/1‑97 (MQ=0)              GATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcc       >  2:1531513/1‑96 (MQ=0)              GATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcc       <  1:710791/101‑6 (MQ=0)               ATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcccgtccc      >  1:3070347/1‑93 (MQ=0)               ATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtccc      >  2:3074343/1‑95 (MQ=0)                TCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtccca     >  1:3481420/1‑94 (MQ=0)                 CCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcccaa    <  1:964861/101‑9 (MQ=0)                   ACGCCCCCGCGGGGGGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcccaaac  >  1:1732935/1‑91 (MQ=0)                                         |||||||||||||||||||||||||||||||||||                                             CACTGCTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC...............................................................................  <  NC_014034/1396341‑1396302 ...........................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAAGGGCATCG  <  NC_014034/1396802‑1396759 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG