New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396469	146 (1.060)	57 (0.410)	9/130	19.3	0.29	coding (351/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1396639 =	139 (0.660)					coding (521/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

GGGCACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1396425‑1396469 ................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCATGCGGCGATA  >  NC_014034/1396639‑1396682                                              |||||||||||||||||||||||||||||||||||                                             ggtaaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCG                         <  2:693835/93‑1 (MQ=0)    aaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGG                      >  1:1035369/6‑101 (MQ=0)    aaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGG                      >  2:459927/6‑101 (MQ=0)    aaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGG                      >  1:641202/6‑101 (MQ=0)    aaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGG                      <  1:2395909/96‑1 (MQ=0)    aaggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGG                      >  2:1505818/6‑101 (MQ=0)     aggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGA                     >  1:3435224/5‑101 (MQ=0)      ggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  2:1984778/98‑1 (MQ=1)      ggcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGAT                    >  1:3540112/4‑101 (MQ=1)      gaccggtcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  2:3695594/93‑1 (MQ=1)       gcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  1:1592516/99‑1 (MQ=1)       gcCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATC                   >  1:1120777/3‑101 (MQ=1)        cCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCG                  >  1:2815098/2‑101 (MQ=1)         CGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  1:3729463/101‑1 (MQ=1)          ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  2:665532/4‑101 (MQ=1)          ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  2:3191313/98‑1 (MQ=1)          ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  1:3977242/4‑101 (MQ=1)          ggtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  1:3373446/98‑1 (MQ=1)           gtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  2:1356493/99‑1 (MQ=1)           gtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  2:3552237/3‑101 (MQ=1)           gtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  1:2473691/3‑101 (MQ=1)           gtGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  2:2618523/3‑101 (MQ=1)            tGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              >  1:3003947/2‑101 (MQ=1)            tGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC              <  1:1526138/100‑1 (MQ=1)              GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACta            <  2:3126514/101‑3 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT           <  2:58969/101‑1 (MQ=1)               TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAT           >  1:1988317/1‑101 (MQ=1)                CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATG          >  1:3801984/1‑101 (MQ=1)                CGCGCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATG          <  2:2554911/101‑1 (MQ=0)                CGCCCCCCCCGCGGGGGCGTGGATCGAAACCCCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATG          <  2:71848/101‑1 (MQ=0)                 GCTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGC         >  1:4004352/1‑101 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCt        <  2:3393013/101‑2 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCt        <  2:1970063/101‑2 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCt        >  1:3318772/1‑100 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCt        >  2:863225/1‑100 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCG        >  2:3965954/1‑101 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCG        >  2:1362953/1‑101 (MQ=1)                  CTCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCCGGGGCGTGGATCGAAACTATGCG        >  2:3998412/1‑101 (MQ=0)                   cCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       <  1:3625092/100‑3 (MQ=0)                   TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       <  1:1225729/101‑3 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       >  1:2133854/1‑99 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       <  2:1035278/101‑3 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       <  1:576357/101‑3 (MQ=1)                   TCCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtg       >  1:3319607/1‑99 (MQ=1)                    CCCCCCGCGGGGGCGTGGATCGAAACCCCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg      <  2:1938656/101‑4 (MQ=0)                    CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg      >  2:2425070/1‑98 (MQ=0)                    CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg      >  1:896318/1‑98 (MQ=0)                    CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg      >  1:2602771/1‑98 (MQ=0)                    CCCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtgg      >  1:3345775/1‑98 (MQ=0)                     CCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGNATCGAAACTATGCtggc     >  2:561563/1‑97 (MQ=0)                     CCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggc     <  2:2618532/101‑5 (MQ=0)                     CCCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggc     <  1:277709/101‑5 (MQ=0)                      CCCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggct    <  2:2518090/101‑6 (MQ=0)                       CCCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctc   <  2:641125/101‑7 (MQ=0)                        CCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctcg  <  1:733245/101‑8 (MQ=0)                        CCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctcg  <  2:1277634/101‑8 (MQ=0)                        CCGCGGGGGCGTGGATCGAAACACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCtggctcg  <  2:942906/101‑8 (MQ=0)                                              |||||||||||||||||||||||||||||||||||                                             GGGCACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1396425‑1396469 ................................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCATGCGGCGATA  >  NC_014034/1396639‑1396682 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG