New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1396469151 (1.080)40 (0.290) 3/132 24.9 0.23 coding (351/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1396902 = 121 (0.570)coding (784/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

CACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC....................................................................................................................................  >  NC_014034/1396428‑1396469
............................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGCCGCATCGGCTTCCGCCTGCGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA  >  NC_014034/1396902‑1396999
                                          ||||||||||||||||||||||||||||||||||                                                                                                  
gccctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG                                                                           >  2:988126/11‑101 (MQ=0)
gccctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG                                                                           <  2:959109/91‑1 (MQ=0)
gccctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGG                                                                           <  1:599133/91‑1 (MQ=0)
 ccctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA                                                                          <  2:212854/92‑1 (MQ=0)
 ccctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGA                                                                          <  1:1796616/92‑1 (MQ=0)
  cctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGAT                                                                         <  2:404372/93‑1 (MQ=0)
   ctcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATC                                                                        <  1:2900958/94‑1 (MQ=0)
    tcgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCG                                                                       >  1:3733577/7‑101 (MQ=1)
     cgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                                                                      >  1:1951001/6‑101 (MQ=1)
     cgcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                                                                      <  2:1713020/96‑1 (MQ=1)
      gcacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                                                                     >  1:1743777/5‑101 (MQ=1)
       cacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                                                                    >  2:2396321/4‑101 (MQ=1)
       cacGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA                                                                    <  2:26960/98‑1 (MQ=1)
        acGTCGCTCTCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC                                                                   >  2:1220508/3‑101 (MQ=1)
        acGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGCTCGAAAC                                                                   >  2:721106/3‑101 (MQ=1)
         cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt                                                                  <  1:444287/100‑2 (MQ=1)
         cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt                                                                  <  2:499947/100‑2 (MQ=1)
         cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt                                                                  <  1:2647483/100‑2 (MQ=1)
         cGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt                                                                  <  1:1248864/100‑2 (MQ=1)
          GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACtg                                                                 >  1:418309/1‑99 (MQ=1)
           TCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGAGCGTGGATCGAAACTGC                                                                >  2:3799775/1‑101 (MQ=1)
             GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgt                                                              <  2:449355/101‑3 (MQ=11)
             GCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgg                                                              >  2:3956885/1‑99 (MQ=11)
              ccCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTG                                                             <  1:1170059/99‑1 (MQ=11)
              CTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTG                                                             >  2:1964467/1‑101 (MQ=11)
              CTCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTG                                                             >  2:1986429/1‑101 (MQ=11)
               cCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGC                                                            <  2:4135168/100‑1 (MQ=11)
               TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCgggc                                                            >  1:812489/1‑97 (MQ=11)
               TCCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACAccgcgg                                                            >  2:3193246/1‑95 (MQ=0)
                CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCG                                                           <  2:1795645/101‑1 (MQ=11)
                CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCGTGCG                                                           >  1:444584/1‑101 (MQ=1)
                CCCCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGAGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCG                                                           <  1:3571313/101‑1 (MQ=2)
                  CCCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGGGCGCG                                                         >  2:4119558/1‑101 (MQ=2)
                  CCCCGCGGGGGCGTGGAGCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCG                                                         <  2:303094/101‑1 (MQ=0)
                   CCCGCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGc                                                        >  1:434030/1‑100 (MQ=0)
                    CCGGGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGcc                                                       <  1:1225931/101‑3 (MQ=0)
                    CCGGGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGcc                                                       <  2:964770/101‑3 (MQ=0)
                      GCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGccat                                                     <  2:2343587/101‑5 (MQ=2)
                      GCGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGccat                                                     <  2:2446692/101‑5 (MQ=2)
                       CGGGGGCGTGGATCGAAACAATGCGGCGCGGGCCTATGGCTGACGGACCCGCCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGccatg                                                    >  1:4051422/1‑96 (MQ=0)
                                                                         gaCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGCCGCATCGGCTTCCGCCTGCGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA  >  2:1579462/3‑101 (MQ=1)
                                          ||||||||||||||||||||||||||||||||||                                                                                                  
CACCACGGCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC....................................................................................................................................  >  NC_014034/1396428‑1396469
............................................................................CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGCCGCATCGGCTTCCGCCTGCGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA  >  NC_014034/1396902‑1396999

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG