New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396639 =	139 (1.010)	56 (0.410)	8/130	20.1	0.30	coding (521/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397399	120 (0.570)					coding (1281/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

TATCGCCGCATGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC......................................................................................................................................  <  NC_014034/1396682‑1396639 ...............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCCGTCTGGCGTGGGGCGCGAAGGCTGTAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGCGAC  <  NC_014034/1397399‑1397301                                             |||||||||||||||||||||||||||||||||||                                                                                                    cgagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGG                                                                               >  2:942906/8‑101 (MQ=0) cgagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGG                                                                               >  2:1277634/8‑101 (MQ=0) cgagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGG                                                                               >  1:733245/8‑101 (MQ=0)  gagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGG                                                                              >  2:641125/7‑101 (MQ=0)   agccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGG                                                                             >  2:2518090/6‑101 (MQ=0)    gccaGCATAGTTTCGATNCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGG                                                                            <  2:561563/97‑1 (MQ=0)    gccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGG                                                                            >  2:2618532/5‑101 (MQ=0)    gccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGG                                                                            >  1:277709/5‑101 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                                           <  2:2425070/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                                           <  1:2602771/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                                           <  1:896318/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                                           <  1:3345775/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGGGTTTCGATCCACGCCCCCGCGGGGGG                                                                           >  2:1938656/4‑101 (MQ=0)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                                          >  1:3625092/3‑100 (MQ=0)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                                          >  2:1035278/3‑101 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                                          >  1:576357/3‑101 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                                          <  1:2133854/99‑1 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                                          <  1:3319607/99‑1 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                                          >  1:1225729/3‑101 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         >  2:3393013/2‑101 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         >  2:1970063/2‑101 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         <  1:3318772/100‑1 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         <  2:863225/100‑1 (MQ=1)       CGCATAGTTTCGATCCACGCCCCGGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         <  2:3998412/101‑1 (MQ=0)       CGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         <  2:3965954/101‑1 (MQ=1)       CGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         <  2:1362953/101‑1 (MQ=1)        GCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                        <  1:4004352/101‑1 (MQ=1)         CATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGCGCG                                                                       >  2:2554911/1‑101 (MQ=0)         CATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                       <  1:3801984/101‑1 (MQ=1)         CATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGGGTTTCGATCCACGCCCCCGCGGGGGGGGCG                                                                       >  2:71848/1‑101 (MQ=0)          ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                      >  2:58969/4‑101 (MQ=1)          ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                      <  1:1988317/98‑1 (MQ=1)           taGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                     >  2:3126514/3‑101 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACca                                                                   >  1:1526138/1‑99 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACca                                                                   <  1:3003947/101‑3 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac                                                                  >  2:1356493/1‑98 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac                                                                  <  2:3552237/101‑4 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac                                                                  <  1:2473691/101‑4 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcac                                                                  <  2:2618523/101‑4 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacc                                                                 >  2:3191313/1‑97 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacc                                                                 <  2:665532/101‑5 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacc                                                                 <  1:3977242/101‑5 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcacc                                                                 >  1:3373446/1‑97 (MQ=1)                TCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccg                                                                >  1:3729463/1‑96 (MQ=1)                 CGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccgg                                                               <  1:2815098/101‑7 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggc                                                              >  1:1592516/1‑94 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggc                                                              <  1:1120777/101‑8 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcc                                                             >  2:1984778/1‑93 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcc                                                             <  1:3540112/101‑9 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGACCGgtc                                                             >  2:3695594/1‑98 (MQ=1)                    TCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcct                                                            <  1:3435224/101‑10 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcctt                                                           <  2:1505818/101‑11 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcctt                                                           >  1:2395909/1‑91 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcctt                                                           <  1:641202/101‑11 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcctt                                                           <  2:459927/101‑11 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcaccggcctt                                                           <  1:1035369/101‑11 (MQ=0)                                                                              GTGTTGCGATCCACGCCCCCGCGGGGGGAGCGACGTCCGTCTGGCGTGGGGCGCGAAGGCTGTAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGGGAC  <  2:918333/101‑1 (MQ=0)                                             |||||||||||||||||||||||||||||||||||                                                                                                    TATCGCCGCATGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC......................................................................................................................................  <  NC_014034/1396682‑1396639 ...............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCCGTCTGGCGTGGGGCGCGAAGGCTGTAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGCGAC  <  NC_014034/1397399‑1397301 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG