New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396639 =	139 (1.010)	57 (0.410)	10/130	18.6	0.45	coding (521/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1434777	NA (NA)					intergenic (‑556/‑402)	RCAP_rcc01334/RCAP_rcc01335	hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

TATCGCCGCATGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1396682‑1396639 ...............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCTGCCCGCGA  <  NC_014034/1434777‑1434733                                             |||||||||||||||||||||||||||||||||||                                              cgagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGG                         >  2:942906/8‑101 (MQ=0) cgagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGG                         >  2:1277634/8‑101 (MQ=0) cgagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGG                         >  1:733245/8‑101 (MQ=0)  gagccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGG                        >  2:641125/7‑101 (MQ=0)   agccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGG                       >  2:2518090/6‑101 (MQ=0)    gccaGCATAGTTTCGATNCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGG                      <  2:561563/97‑1 (MQ=0)    gccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGG                      >  2:2618532/5‑101 (MQ=0)    gccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGG                      >  1:277709/5‑101 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                     <  2:2425070/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                     <  1:2602771/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                     <  1:896318/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGG                     <  1:3345775/98‑1 (MQ=0)     ccaGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGGGTTTCGATCCACGCCCCCGCGGGGGG                     >  2:1938656/4‑101 (MQ=0)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                    >  1:3625092/3‑100 (MQ=0)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    >  2:1035278/3‑101 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    >  1:576357/3‑101 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    <  1:2133854/99‑1 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    <  1:3319607/99‑1 (MQ=1)      caGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                    >  1:1225729/3‑101 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                   >  2:3393013/2‑101 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                   >  2:1970063/2‑101 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                   <  1:3318772/100‑1 (MQ=1)       aGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                   <  2:863225/100‑1 (MQ=1)       CGCATAGTTTCGATCCACGCCCCGGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                   <  2:3998412/101‑1 (MQ=0)       CGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                   <  2:3965954/101‑1 (MQ=1)       CGCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                   <  2:1362953/101‑1 (MQ=1)        GCATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGC                  <  1:4004352/101‑1 (MQ=1)         CATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGCGCG                 >  2:2554911/1‑101 (MQ=0)         CATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                 <  1:3801984/101‑1 (MQ=1)         CATAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGGGTTTCGATCCACGCCCCCGCGGGGGGGGCG                 >  2:71848/1‑101 (MQ=0)          ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                >  2:58969/4‑101 (MQ=1)          ataGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                <  1:1988317/98‑1 (MQ=1)           taGTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC               >  2:3126514/3‑101 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA             >  1:1526138/1‑101 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA             <  1:3003947/101‑1 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAc            >  2:1356493/1‑100 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAc            <  2:3552237/101‑2 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAc            <  1:2473691/101‑2 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAc            <  2:2618523/101‑2 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcc           >  2:3191313/1‑99 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcc           <  2:665532/101‑3 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcc           <  1:3977242/101‑3 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcc           >  1:3373446/1‑99 (MQ=1)                TCGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccg          >  1:3729463/1‑98 (MQ=1)                 CGATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccgg         <  1:2815098/101‑5 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccggc        >  1:1592516/1‑96 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAccggc        <  1:1120777/101‑6 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgaccggtc       >  2:3695594/1‑93 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCC       >  2:1984778/1‑101 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCC       <  1:3540112/101‑1 (MQ=1)                    TCCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCt      <  1:3435224/101‑2 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCtt     <  2:1505818/101‑3 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCtt     >  1:2395909/1‑99 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCtt     <  1:641202/101‑3 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCtt     <  2:459927/101‑3 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCtt     <  1:1035369/101‑3 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACATCCTGTTCCAGACGCACTCGCTGCGGCGCCGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCACCGGCCttacc  >  2:693835/1‑96 (MQ=0)                                             |||||||||||||||||||||||||||||||||||                                              TATCGCCGCATGGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC................................................................................  <  NC_014034/1396682‑1396639 ...............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCTGCCCGCGA  <  NC_014034/1434777‑1434733 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG