New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396703 =	155 (1.020)	26 (0.170)	2/144	27.5	0.15	coding (585/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1434849	141 (0.670)					intergenic (‑628/‑330)	RCAP_rcc01334/RCAP_rcc01335	hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

AGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAT.........................................................................  <  NC_014034/1396746‑1396703 ........................................................................TCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAAGGCGCC  <  NC_014034/1434849‑1434805                                             ||||||||||||||||||||||||||||                                              ctGGACACCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGG                  <  1:856603/99‑1 (MQ=2)  tGGACACCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGG                 >  2:642493/2‑101 (MQ=2)  tGGACACCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGG                 <  1:3779822/100‑1 (MQ=2)   ggaccccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGG                <  1:3300111/94‑1 (MQ=2)     acaccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGTATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAG              <  2:2162558/96‑1 (MQ=2)      ccccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGC             <  1:2310798/97‑1 (MQ=2)       cccGTTTCGATCCCCGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCG            <  2:1539298/98‑1 (MQ=2)       cccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCG            <  1:1455733/98‑1 (MQ=11)       accGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCa            >  1:3372010/4‑100 (MQ=2)        ccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGA           <  1:3368013/99‑1 (MQ=11)        ccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGA           >  1:606104/3‑101 (MQ=11)        ccGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGA           >  1:53913/3‑101 (MQ=11)         cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC          <  1:418791/100‑1 (MQ=11)           TTTCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgc        >  1:842616/1‑99 (MQ=1)             TCGATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcgg      >  2:2522027/1‑97 (MQ=0)              CGATCCCCGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggt     <  1:1272443/101‑6 (MQ=0)               GATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggta    >  1:3034465/1‑95 (MQ=0)               GATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggta    >  2:2283138/1‑95 (MQ=0)               GATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggta    >  2:3474019/1‑95 (MQ=0)                gTCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggtat   <  1:2099487/100‑8 (MQ=0)                ATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggtat   >  1:444937/1‑94 (MQ=0)                ATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggtat   >  1:3497960/1‑94 (MQ=0)                ATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggtat   <  2:2191593/101‑8 (MQ=0)                ATCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggtat   >  2:2588377/1‑94 (MQ=0)                 TCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggtatc  <  1:2796720/101‑9 (MQ=0)                 TCCACGCCCCCGCGGGGGGAGCGACGATCGAGCCCGGCCGATTGCGGATTTGATCATCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACgcggtatc  <  1:1987898/101‑9 (MQ=0)                                             ||||||||||||||||||||||||||||                                              AGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAT.........................................................................  <  NC_014034/1396746‑1396703 ........................................................................TCCATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACAAGGCGCC  <  NC_014034/1434849‑1434805 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG