New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396705 =	139 (0.990)	42 (0.300)	5/132	22.9	0.23	coding (587/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397132	139 (0.660)					coding (1014/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

ATGAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG...............................................................................  <  NC_014034/1396749‑1396705 ...............................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGACATGTGCTCG  <  NC_014034/1397132‑1397088                                              ||||||||||||||||||||||||||||||||||                                              ggtgtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCG                         >  2:1064008/9‑101 (MQ=0) ggtgtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCG                         >  2:3801100/9‑101 (MQ=0)   tgtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGG                       <  1:509635/95‑1 (MQ=0)   tgtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGG                       >  1:3862991/7‑101 (MQ=0)   tgtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGG                       >  1:3223744/7‑101 (MQ=0)    gtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGG                      <  1:3279536/96‑1 (MQ=0)     tcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGG                     <  2:1438207/97‑1 (MQ=0)      cagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGG                    >  1:2122348/4‑101 (MQ=1)      cagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGG                    <  2:2927319/98‑1 (MQ=1)        gCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAG                  <  2:2861610/100‑1 (MQ=1)         CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGCGC                 >  1:648318/1‑101 (MQ=0)         CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:2438902/101‑1 (MQ=1)         CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:639350/1‑101 (MQ=1)          agcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  2:896233/4‑101 (MQ=1)            cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              <  2:3377662/100‑1 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             >  2:292905/1‑101 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             <  2:3618542/101‑1 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG             <  2:836257/101‑1 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA            <  2:4067721/101‑1 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA            <  1:1696140/101‑1 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAt           <  2:1583620/101‑2 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAt           <  2:2043874/101‑2 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAt           <  1:3139733/101‑2 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAt           <  2:3253669/101‑2 (MQ=1)                gCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAta          <  1:512400/100‑3 (MQ=1)                TCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAta          <  2:2813122/101‑3 (MQ=1)                 CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCCGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCAGCGGGGGGAGCGACGAtag         <  1:3667340/101‑4 (MQ=0)                 CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtag         >  2:3909026/1‑98 (MQ=1)                 CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtaa         >  2:512343/1‑98 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagc        >  1:4103861/1‑97 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagc        >  2:3689584/1‑97 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcc       >  2:2943274/1‑96 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcc       >  1:1265166/1‑96 (MQ=1)                     CCACGCCCCCGCGGGGGGAGCGACGCCGCATATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccg     >  2:1775742/1‑94 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccg     >  1:1363053/1‑94 (MQ=0)                       ACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgcc   >  2:3829957/1‑92 (MQ=0)                       ACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgcc   <  1:1397651/101‑10 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgccg  <  2:2020213/101‑11 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgccg  <  1:886214/101‑11 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgccg  >  2:4185976/1‑91 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgccg  <  1:794005/101‑11 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAtagcccgccg  >  2:539692/1‑91 (MQ=0)                                              ||||||||||||||||||||||||||||||||||                                              ATGAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG...............................................................................  <  NC_014034/1396749‑1396705 ...............................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGACATGTGCTCG  <  NC_014034/1397132‑1397088 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG