New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396802	181 (1.310)	35 (0.250)	10/130	18.6	0.20	coding (684/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397034 =	106 (0.500)					coding (916/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.............................................................................  >  NC_014034/1396759‑1396802 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTG  >  NC_014034/1397034‑1397075                                             |||||||||||||||||||||||||||||||||||                                           gtttgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCCCCCCGCGGGGGCGT                      <  1:1732935/91‑1 (MQ=0)   ttgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGG                    >  1:964861/9‑101 (MQ=0)    tgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGA                   <  1:3481420/94‑1 (MQ=0)     gggacgggGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGAT                  <  1:3070347/93‑1 (MQ=0)     gggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGAT                  <  2:3074343/95‑1 (MQ=0)      ggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC                 <  2:1531513/96‑1 (MQ=0)      ggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC                 >  1:710791/6‑101 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG                <  2:777493/97‑1 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG                >  2:1770830/5‑101 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG                <  1:63788/97‑1 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG                <  1:1596964/97‑1 (MQ=0)        gcgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCCCCCCGCGGGGGCGTGGATCGA               <  2:2557425/98‑1 (MQ=1)        acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA               <  2:1998846/98‑1 (MQ=0)        acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA               >  2:1872176/4‑101 (MQ=0)        acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA               <  1:776596/98‑1 (MQ=0)          gGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAA             <  2:12812/100‑1 (MQ=1)           GAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAAC            >  1:1112130/1‑101 (MQ=1)            gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACT           <  2:1034304/100‑1 (MQ=1)            AGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACT           <  1:3098174/101‑1 (MQ=1)            AGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGGGGATCGAAACT           >  2:1708598/1‑101 (MQ=0)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTG          <  1:2323237/101‑1 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtg        <  1:4122007/101‑3 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtg        >  2:566769/1‑99 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgc       >  1:4226149/1‑98 (MQ=0)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgc       >  2:164189/1‑98 (MQ=0)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgc       <  2:4108099/101‑4 (MQ=0)                 CTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgcc      <  1:361102/101‑5 (MQ=2)                  TCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGCGCGTGGATCGAAACTGtgccg     <  1:2402867/101‑6 (MQ=9)                   CCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgccgg    >  1:1183267/1‑95 (MQ=9)                   CCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgccgg    <  1:1143593/101‑7 (MQ=9)                    CCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgccggt   >  2:3922592/1‑94 (MQ=9)                    CCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgccggt   >  2:3029435/1‑94 (MQ=9)                    CCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgccggt   <  1:2389571/101‑8 (MQ=9)                     CCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgccggtt  <  1:3733122/101‑9 (MQ=9)                     CCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGtgccggtt  <  1:381193/101‑9 (MQ=9)                                             |||||||||||||||||||||||||||||||||||                                           CGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.............................................................................  >  NC_014034/1396759‑1396802 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTG  >  NC_014034/1397034‑1397075 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG