New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396802	184 (1.300)	29 (0.200)	5/134	23.1	0.16	coding (684/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397834 =	125 (0.590)					intergenic (+138/+1760)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

CGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...........................................................................  >  NC_014034/1396759‑1396802 .............................................................................ATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCACC  >  NC_014034/1397834‑1397875                                             |||||||||||||||||||||||||||||||||                                           gtttgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCCCCCCGCGGGGGCGT                    <  1:1732935/91‑1 (MQ=0)   ttgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGG                  >  1:964861/9‑101 (MQ=0)    tgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGA                 <  1:3481420/94‑1 (MQ=0)     gggacgggGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGAT                <  1:3070347/93‑1 (MQ=0)     gggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGAT                <  2:3074343/95‑1 (MQ=0)      ggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC               <  2:1531513/96‑1 (MQ=0)      ggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC               >  1:710791/6‑101 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG              <  2:777493/97‑1 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG              <  1:1596964/97‑1 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG              >  2:1770830/5‑101 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG              <  1:63788/97‑1 (MQ=0)        gcgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCCCCCCGCGGGGGCGTGGATCGA             <  2:2557425/98‑1 (MQ=1)        acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA             <  2:1998846/98‑1 (MQ=0)        acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA             >  2:1872176/4‑101 (MQ=0)        acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA             <  1:776596/98‑1 (MQ=0)          gGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAA           <  2:12812/100‑1 (MQ=1)           GAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAAC          >  1:1112130/1‑101 (MQ=1)            gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACt         <  2:1034304/100‑2 (MQ=1)            AGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACt         <  1:3098174/101‑2 (MQ=1)            AGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGGGGATCGAAACt         >  2:1708598/1‑100 (MQ=0)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtg        <  1:2323237/101‑3 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtgtg      <  1:4122007/101‑5 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtgtg      >  2:566769/1‑97 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtgtgc     >  1:4226149/1‑96 (MQ=0)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtgtgc     >  2:164189/1‑96 (MQ=0)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtgtgc     <  2:4108099/101‑6 (MQ=0)                 CTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtgtgcc    <  1:361102/101‑7 (MQ=2)                   CCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtgtgccgg  >  1:1183267/1‑93 (MQ=9)                   CCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACtgtgccgg  <  1:1143593/101‑9 (MQ=9)                                             |||||||||||||||||||||||||||||||||                                           CGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...........................................................................  >  NC_014034/1396759‑1396802 .............................................................................ATGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGGCACC  >  NC_014034/1397834‑1397875 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG