New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396802	181 (1.310)	32 (0.230)	7/130	20.9	0.17	coding (684/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	1397903 =	129 (0.610)					intergenic (+207/+1691)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

CGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC............................................................................  >  NC_014034/1396759‑1396802 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTATGGGA  >  NC_014034/1397903‑1397943                                             |||||||||||||||||||||||||||||||||||                                          gtttgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCCCCCCGCGGGGGCGT                     <  1:1732935/91‑1 (MQ=0)   ttgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGG                   >  1:964861/9‑101 (MQ=0)    tgggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGA                  <  1:3481420/94‑1 (MQ=0)     gggacgggGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGAT                 <  1:3070347/93‑1 (MQ=0)     gggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGAT                 <  2:3074343/95‑1 (MQ=0)      ggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC                <  2:1531513/96‑1 (MQ=0)      ggacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATC                >  1:710791/6‑101 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG               <  2:777493/97‑1 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG               >  2:1770830/5‑101 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG               <  1:63788/97‑1 (MQ=0)       gacgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCG               <  1:1596964/97‑1 (MQ=0)        gcgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCCCCCCGCGGGGGCGTGGATCGA              <  2:2557425/98‑1 (MQ=1)        acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA              <  2:1998846/98‑1 (MQ=0)        acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA              >  2:1872176/4‑101 (MQ=0)        acgGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGA              <  1:776596/98‑1 (MQ=0)          gGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAA            <  2:12812/100‑1 (MQ=1)           GAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAAC           >  1:1112130/1‑101 (MQ=1)            gGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACT          <  2:1034304/100‑1 (MQ=1)            AGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACT          <  1:3098174/101‑1 (MQ=1)            AGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGGGGATCGAAACT          >  2:1708598/1‑101 (MQ=0)             GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTg         <  1:2323237/101‑2 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtg       <  1:4122007/101‑4 (MQ=1)               CGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtg       >  2:566769/1‑98 (MQ=1)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtgc      >  2:164189/1‑97 (MQ=0)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtgc      >  1:4226149/1‑97 (MQ=0)                GCTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtgc      <  2:4108099/101‑5 (MQ=0)                 CTCCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtgcc     <  1:361102/101‑6 (MQ=2)                   CCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtgccgg   >  1:1183267/1‑94 (MQ=9)                   CCCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtgccgg   <  1:1143593/101‑8 (MQ=9)                    CCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtgccggt  <  1:2389571/101‑9 (MQ=9)                    CCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtgccggt  >  2:3029435/1‑93 (MQ=9)                    CCCCCGCGGGGGCGTGGATCGAAACAGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTATGTCGCTCACCCCGCGGGGGCGTGGATCGAAACTgtgccggt  >  2:3922592/1‑93 (MQ=9)                                             |||||||||||||||||||||||||||||||||||                                          CGATGCCCTTGAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC............................................................................  >  NC_014034/1396759‑1396802 ...............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCTATGGGA  >  NC_014034/1397903‑1397943 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG