New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1397166 =	135 (0.950)	40 (0.280)	4/134	24.1	0.24	coding (1048/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1397199	125 (0.590)					coding (1081/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

TGGCAGACACGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG....................................................................................................................................  <  NC_014034/1397208‑1397166 ............................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCACGGTCGAAGACATGTGGCGCGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGA  <  NC_014034/1397199‑1397101                                            |||||||||||||||||||||||||||||||||                                                                                                    ccatagccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGG                                                                            >  1:1303194/11‑101 (MQ=0) ccatagccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGG                                                                            <  2:374906/91‑1 (MQ=0) ccatagccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGG                                                                            >  1:443776/11‑101 (MQ=0)  catagccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGG                                                                           <  2:1341136/92‑1 (MQ=0)   atagccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGG                                                                          <  1:566797/93‑1 (MQ=0)     agccatGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                        >  1:888322/7‑101 (MQ=0)     agccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                        <  2:4104286/95‑1 (MQ=1)     agccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                        <  2:3953913/95‑1 (MQ=1)     agccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                        >  1:2607577/7‑101 (MQ=1)      gccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGNCGTTTCGATCCNCGCCCCCGCGGGGGGAGC                                                                       >  1:1584022/6‑101 (MQ=1)      gccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                       <  2:1011069/96‑1 (MQ=1)      gccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                       <  1:1325916/96‑1 (MQ=1)       ccatGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                      >  2:1424592/5‑101 (MQ=1)        catGTTTGGATCCGCGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                     <  2:3700748/98‑1 (MQ=0)        catGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                     >  2:3549510/4‑101 (MQ=1)        catGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                     <  2:2553466/98‑1 (MQ=1)        catGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                     >  1:3966214/4‑101 (MQ=1)        catGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                     <  1:1428498/98‑1 (MQ=1)         atGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGCTCCACGCCCCCGCGGGGGGAGCGgc                                                                    >  1:2107128/3‑99 (MQ=1)         atGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                    >  2:3473134/3‑101 (MQ=1)         atGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                    >  2:2561632/3‑101 (MQ=1)         atGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                    <  2:1485737/99‑1 (MQ=1)         atGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                    >  1:2467971/3‑101 (MQ=1)          tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                   >  1:1848584/2‑101 (MQ=11)          tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                   >  1:2989642/2‑101 (MQ=11)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGG                                                                  >  2:651385/1‑101 (MQ=1)           GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGG                                                                  >  2:1614915/1‑101 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGC                                                                 <  2:143458/101‑1 (MQ=1)            TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGC                                                                 <  1:3178015/101‑1 (MQ=1)             TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCG                                                                >  1:3474012/1‑101 (MQ=1)             TTCGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCG                                                                >  2:2383602/1‑101 (MQ=1)               CGATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGat                                                              <  1:1670004/101‑3 (MQ=1)                GATCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatg                                                             <  1:4200071/101‑4 (MQ=1)                  TCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGCGCGACGGCGatggg                                                           >  1:2459914/1‑96 (MQ=0)                  TCCACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtg                                                           <  1:3339473/101‑6 (MQ=1)                    CACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtgac                                                         >  1:2816276/1‑94 (MQ=0)                    CACGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtgac                                                         <  1:2526391/101‑8 (MQ=0)                     cCGCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtgacc                                                        <  2:869048/100‑9 (MQ=0)                       GCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtgaccag                                                      >  2:2193784/1‑91 (MQ=0)                       GCCCCCGCGGGGGGAGCGACGCAACCGCGAGCGCACCCAGACCGAGATCTACGCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGatgtgaccag                                                      >  1:2469609/1‑91 (MQ=0)                                                                           cCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCACGGTCGAAGACATGTGGCGCGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGA  <  2:3888412/100‑1 (MQ=1)                                            |||||||||||||||||||||||||||||||||                                                                                                    TGGCAGACACGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG....................................................................................................................................  <  NC_014034/1397208‑1397166 ............................................................................CGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGGCGCACGGTCGAAGACATGTGGCGCGAGCTGGACGTTTCGATCCACGCCCCCGCGGGGGGAGCGA  <  NC_014034/1397199‑1397101 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG