New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1397198120 (0.870)40 (0.290) 3/130 24.7 0.24 coding (1080/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1397434 = 137 (0.650)coding (1316/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

GACCGTGCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1397156‑1397198
..............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCGTCATCACC  >  NC_014034/1397434‑1397477
                                           |||||||||||||||||||||||||||||||||||                                            
ggtgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                       >  2:3624233/11‑101 (MQ=1)
ggtgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                       >  2:3429367/11‑101 (MQ=1)
ggtgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                       >  1:2920285/11‑101 (MQ=1)
ggtgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTG                       >  1:3257903/11‑101 (MQ=1)
 gtgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGG                      >  1:1804649/10‑101 (MQ=1)
   gccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                    >  2:1021792/8‑101 (MQ=1)
   gccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  1:3901565/94‑1 (MQ=1)
   gccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGAT                    <  2:2750288/94‑1 (MQ=1)
    ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATC                   <  2:3387133/95‑1 (MQ=1)
     cgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGCCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCG                  <  2:2039215/96‑1 (MQ=1)
      gctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGA                 <  1:3872994/97‑1 (MQ=1)
       ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                <  1:4104645/98‑1 (MQ=1)
       ctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAA                >  2:1804106/4‑101 (MQ=1)
        tgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               <  1:3477866/99‑1 (MQ=1)
        tgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA               >  1:2362919/3‑101 (MQ=1)
          CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAaa             >  2:3298710/1‑99 (MQ=1)
           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt            <  1:3674910/101‑2 (MQ=1)
           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt            >  1:1932008/1‑100 (MQ=1)
           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt            >  1:101328/1‑100 (MQ=1)
           GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGCGGCGTGGATCGACACAC            >  2:3610652/1‑101 (MQ=0)
            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtc           <  1:595657/101‑3 (MQ=1)
            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtc           <  1:3421885/101‑3 (MQ=1)
            TCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACAGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAtc           >  1:1500181/1‑99 (MQ=1)
             ngccnCCCCCGCGGGGGCGTGGATCGAAACTCCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCG          <  1:3196898/96‑1 (MQ=0)
             CGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGAGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCG          >  2:53898/1‑101 (MQ=1)
               CTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGat        >  2:606040/1‑99 (MQ=1)
               CTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGat        <  2:1734567/101‑3 (MQ=1)
                cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatg       <  2:2424900/100‑4 (MQ=1)
                cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatg       <  2:1819103/100‑4 (MQ=1)
                cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatg       <  2:1123935/100‑4 (MQ=1)
                cCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatg       <  2:543381/100‑4 (MQ=1)
                TCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatg       >  1:4018302/1‑98 (MQ=1)
                 CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatga      >  1:3048408/1‑97 (MQ=1)
                 CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatga      >  1:2880808/1‑97 (MQ=1)
                 CCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatga      >  2:4146519/1‑97 (MQ=1)
                  CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatgat     <  1:1085694/101‑6 (MQ=1)
                  CCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatgat     <  2:3743034/101‑6 (MQ=1)
                    CCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatgatca   <  1:3298951/101‑8 (MQ=0)
                    CCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatgatca   <  1:2699718/101‑8 (MQ=0)
                     CCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCGatgatcaa  >  2:2891494/1‑93 (MQ=0)
                                           |||||||||||||||||||||||||||||||||||                                            
GACCGTGCGCCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...............................................................................  >  NC_014034/1397156‑1397198
..............................................................................GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCGTCATCACC  >  NC_014034/1397434‑1397477

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG