New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1397233 =126 (0.900)39 (0.280) 3/132 24.9 0.24 coding (1115/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1397399 122 (0.580)coding (1281/1578 nt) RCAP_rcc01307 hypothetical protein
Rejected: Position hash score below cutoff.

GCGTGCGCGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.....................................................................................................................................  <  NC_014034/1397276‑1397233
..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCCGTCTGGCGTGGGGCGCGAAGGCTGTAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGCGAC  <  NC_014034/1397399‑1397301
                                            ||||||||||||||||||||||||||||||||||                                                                                                   
tgatcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGG                                                                              >  1:2699718/11‑101 (MQ=0)
tgatcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGG                                                                              >  1:3298951/11‑101 (MQ=0)
  atcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGG                                                                            >  1:1085694/9‑101 (MQ=1)
  atcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGG                                                                            >  2:3743034/9‑101 (MQ=1)
   tcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                                           <  2:4146519/94‑1 (MQ=1)
   tcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                                           <  1:2880808/94‑1 (MQ=1)
   tcatcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGG                                                                           <  1:3048408/94‑1 (MQ=1)
    catcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                                          >  2:1123935/7‑100 (MQ=1)
    catcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                                          >  2:543381/7‑100 (MQ=1)
    catcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                                          >  2:1819103/7‑100 (MQ=1)
    catcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGg                                                                          >  2:2424900/7‑100 (MQ=1)
    catcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGA                                                                          <  1:4018302/95‑1 (MQ=1)
     atcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         >  2:1734567/6‑101 (MQ=1)
     atcgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                         <  2:606040/96‑1 (MQ=1)
       cgaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGAGTTTCGATCCACGCCCCCGCGGGGGNGGCn                                                                       >  1:3196898/4‑100 (MQ=0)
       CGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCTCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                       <  2:53898/101‑1 (MQ=1)
        gaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCTGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                      <  1:1500181/99‑1 (MQ=1)
        gaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                      >  1:3421885/3‑101 (MQ=1)
        gaTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGA                                                                      >  1:595657/3‑101 (MQ=1)
         aTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                     <  1:101328/100‑1 (MQ=1)
         aTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                     <  1:1932008/100‑1 (MQ=1)
         aTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                     >  1:3674910/2‑101 (MQ=1)
         GTGTGTCGATCCACGCCGCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC                                                                     <  2:3610652/101‑1 (MQ=0)
          ttTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                    <  2:3298710/99‑1 (MQ=1)
            TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGca                                                                  <  1:2362919/101‑3 (MQ=1)
            TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGca                                                                  >  1:3477866/1‑99 (MQ=1)
             TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcag                                                                 <  2:1804106/101‑4 (MQ=1)
             TTCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcag                                                                 >  1:4104645/1‑98 (MQ=1)
              TCGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagc                                                                >  1:3872994/1‑97 (MQ=1)
               CGATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcg                                                               >  2:2039215/1‑96 (MQ=1)
                GATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcgg                                                              >  2:3387133/1‑95 (MQ=1)
                 ATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggc                                                             >  2:2750288/1‑94 (MQ=1)
                 ATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggc                                                             <  2:1021792/101‑8 (MQ=1)
                 ATCCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggc                                                             >  1:3901565/1‑94 (MQ=1)
                   CCACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggcac                                                           <  1:1804649/101‑10 (MQ=1)
                    CACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggcacc                                                          <  1:3257903/101‑11 (MQ=1)
                    CACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggcacc                                                          <  2:3429367/101‑11 (MQ=1)
                    CACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggcacc                                                          <  2:3624233/101‑11 (MQ=1)
                    CACGCCCCCGCGGGGGGAGCGACGCGGTATCGGTGTTCGCCGCCGACAGGTTCGGGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGcagcggcacc                                                          <  1:2920285/101‑11 (MQ=1)
                                                                            GTGTTGCGATCCACGCCCCCGCGGGGGGAGCGACGTCCGTCTGGCGTGGGGCGCGAAGGCTGTAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGGGAC  <  2:918333/101‑1 (MQ=0)
                                            ||||||||||||||||||||||||||||||||||                                                                                                   
GCGTGCGCGGTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG.....................................................................................................................................  <  NC_014034/1397276‑1397233
..............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCCGTCTGGCGTGGGGCGCGAAGGCTGTAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGCGAC  <  NC_014034/1397399‑1397301

Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG