New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1397301 =	133 (0.900)	22 (0.150)	7/140	22.1	0.25	coding (1183/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1434780	NA (NA)					intergenic (‑559/‑399)	RCAP_rcc01334/RCAP_rcc01335	hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

TAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGCGAC........................................................................  <  NC_014034/1397339‑1397301 .....................................................................GTCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCTGC  <  NC_014034/1434780‑1434739                                        ||||||||||||||||||||||||||||||                                           gAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGC            <  1:1979495/100‑1 (MQ=255) gAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGC            >  1:993780/2‑101 (MQ=255)  AAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCG           >  1:41447/1‑101 (MQ=255)   AAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGA          >  1:3858616/1‑101 (MQ=255)     gctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC        >  1:3625243/4‑101 (MQ=255)     gctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC        <  2:640582/98‑1 (MQ=255)     gctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC        >  2:1836845/4‑101 (MQ=255)     gctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC        <  1:3080607/98‑1 (MQ=255)      ctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA       >  2:1564782/3‑101 (MQ=255)      ctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA       <  1:2314939/99‑1 (MQ=255)      ctGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCA       >  1:1628092/3‑101 (MQ=255)       tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAc      <  1:4108360/100‑2 (MQ=255)       tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAc      >  1:2609604/2‑100 (MQ=255)       tGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAc      >  2:2800312/2‑100 (MQ=255)        GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcg     >  1:271955/1‑99 (MQ=255)        GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcg     <  2:599069/101‑3 (MQ=255)        GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACCCCCCCGCGGGGGGAGCGACCAcg     <  1:398216/101‑3 (MQ=255)         TTTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcgt    <  2:2748688/101‑4 (MQ=255)          TTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcgtc   >  2:3044448/1‑97 (MQ=255)          TTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcgtc   <  2:3206203/101‑5 (MQ=255)          TTCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcgtc   >  2:3929102/1‑97 (MQ=255)           TCGATCCACGCCCCCGCGGGGGGAGCGACTCCGTCCCAAACCGTGACCAGAGCCCCGGTGTAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAcgtcc  <  2:1743447/101‑6 (MQ=255)                                        ||||||||||||||||||||||||||||||                                           TAAAGCCGTTTCGATCCACGCTCCCGCGGGGGGAGCGAC........................................................................  <  NC_014034/1397339‑1397301 .....................................................................GTCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCAGCTGC  <  NC_014034/1434780‑1434739 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG