New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 139779775 (0.540)91 (0.660) 37/130 6.6 0.48 intergenic (+101/+1797) RCAP_rcc01307/RCAP_rcc01309 hypothetical protein/IS66 family transposase
?NC_014034 1434877 = 124 (0.590)intergenic (‑656/‑302) RCAP_rcc01334/RCAP_rcc01335 hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

Only 100 of 187 total aligned reads displayed.

AGGTCGCTCCCCCCGCGGGCGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...........................................................................  >  NC_014034/1397698‑1397797
.......................................................................................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGTGATG  >  NC_014034/1434877‑1434916
                                                                                                    |||||||||||||||||||||||||||||||||||                                        
AGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT                                                                            <  1:1031671/101‑1 (MQ=1)
AGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT                                                                            <  2:104246/101‑1 (MQ=1)
  GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG                                                                          <  1:296693/101‑1 (MQ=1)
  GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCG                                                                          >  2:1281685/1‑101 (MQ=1)
    CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGC                                                                        >  2:2984622/1‑101 (MQ=1)
    CGCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGC                                                                        >  1:886649/1‑101 (MQ=1)
     GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCA                                                                       >  2:2851644/1‑101 (MQ=1)
     GCTCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCA                                                                       <  2:1634592/101‑1 (MQ=1)
       TCCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG                                                                     >  1:959905/1‑101 (MQ=1)
        CCCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGG                                                                    >  2:2281439/1‑101 (MQ=1)
         CCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGA                                                                   <  1:4140426/101‑1 (MQ=1)
         CCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGA                                                                   <  2:323364/101‑1 (MQ=1)
         CCCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGA                                                                   <  2:2558965/101‑1 (MQ=1)
          CCCCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGAC                                                                  >  1:1758618/1‑101 (MQ=1)
            cgGCGGGGGCGTGGATCGAAACTTGTCTGGCGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT                                                                <  1:839759/99‑1 (MQ=0)
            CCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT                                                                >  1:1938782/1‑101 (MQ=1)
            CCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT                                                                <  1:4118372/101‑1 (MQ=1)
            CCGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT                                                                <  2:2908475/101‑1 (MQ=1)
             CGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC                                                               >  1:1074353/1‑101 (MQ=1)
             CGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC                                                               <  2:4116672/101‑1 (MQ=1)
              GCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCG                                                              <  1:3310624/101‑1 (MQ=1)
               CGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGC                                                             >  2:1922366/1‑101 (MQ=1)
               CGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGC                                                             <  2:3915813/101‑1 (MQ=1)
                 gggGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCG                                                           <  2:886568/98‑1 (MQ=1)
                 gggGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCG                                                           >  1:1497291/4‑101 (MQ=1)
                  ggGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGA                                                          <  2:1908937/99‑1 (MQ=1)
                  ggGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGA                                                          >  1:1064102/3‑101 (MQ=1)
                   gGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGAT                                                         >  1:1984904/2‑101 (MQ=1)
                    GCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATC                                                        >  1:2055932/1‑101 (MQ=1)
                     CGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCT                                                       >  1:2411907/1‑101 (MQ=1)
                      GTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTG                                                      >  1:738821/1‑101 (MQ=1)
                      GTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTG                                                      >  1:3986507/1‑101 (MQ=1)
                       TGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGG                                                     >  2:2142900/1‑101 (MQ=1)
                       TGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGG                                                     <  1:3257315/101‑1 (MQ=1)
                       TGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGG                                                     >  1:3126745/1‑101 (MQ=1)
                         GATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGT                                                   >  1:2657327/1‑101 (MQ=1)
                         GATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGT                                                   >  2:566690/1‑101 (MQ=1)
                            CGAAACTTGTCTGACTCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAG                                                <  2:2092402/101‑1 (MQ=1)
                            CGAAACTTGTCTGACGTGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAG                                                >  1:3699091/1‑101 (MQ=1)
                            CGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAG                                                >  1:3125324/1‑101 (MQ=1)
                            CGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAG                                                >  1:3624435/1‑101 (MQ=1)
                            CGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAG                                                <  2:2969825/101‑1 (MQ=1)
                            CGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAG                                                <  1:1040157/101‑1 (MQ=1)
                             GAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGG                                               <  1:3868978/101‑1 (MQ=1)
                             GAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGG                                               >  2:703012/1‑101 (MQ=1)
                              AAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGC                                              >  1:859735/1‑101 (MQ=1)
                              AAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGC                                              <  1:1864486/101‑1 (MQ=1)
                               AACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCC                                             >  2:2863881/1‑101 (MQ=1)
                               AACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCC                                             <  1:4129270/101‑1 (MQ=1)
                               AACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCC                                             <  2:1728063/101‑1 (MQ=1)
                                ACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCG                                            <  1:343544/101‑1 (MQ=1)
                                 CTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGG                                           <  1:52167/101‑1 (MQ=1)
                                 CTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGG                                           >  2:1053451/1‑101 (MQ=1)
                                 CTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGCCAGGCCGG                                           >  2:3080716/1‑101 (MQ=0)
                                  TTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGg                                          >  2:3796223/1‑100 (MQ=1)
                                   TGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTG                                         >  1:2882336/1‑101 (MQ=1)
                                   TGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTG                                         >  2:2087050/1‑101 (MQ=1)
                                     TCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGT                                       >  1:2610346/1‑101 (MQ=1)
                                      CTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGGAAGGCCGGGGGTC                                      >  2:2037827/1‑101 (MQ=0)
                                      CTGACGCGCTCAGCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTC                                      <  1:30174/101‑1 (MQ=1)
                                       TGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCG                                     <  2:3942448/101‑1 (MQ=1)
                                       TGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCG                                     <  2:1497187/101‑1 (MQ=1)
                                           GCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGGCGCTCC                                 >  2:2638153/1‑101 (MQ=1)
                                               TCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGTCCGGTGGTCGCTCCCCCC                             <  2:2722484/101‑1 (MQ=1)
                                                CATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCG                            <  2:1959793/101‑1 (MQ=1)
                                                CATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCG                            >  1:2709019/1‑101 (MQ=1)
                                                 ATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGC                           >  2:4177459/1‑101 (MQ=1)
                                                 ATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGC                           <  2:1497242/101‑1 (MQ=1)
                                                  TCAGCACGTCAAGATTCAGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCTGCG                          <  2:864033/101‑1 (MQ=0)
                                                   CAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGTTAAGGCCGGTGGTCGCTCCCCCCGCGG                         >  1:308206/1‑101 (MQ=1)
                                                     GCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGG                       >  2:4103600/1‑101 (MQ=1)
                                                      CACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCGCCCCCCGCGGGGG                      >  2:2463875/1‑101 (MQ=1)
                                                       cCGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGC                     <  2:3593921/100‑1 (MQ=1)
                                                       ACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGC                     <  1:1601225/101‑1 (MQ=1)
                                                       ACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGC                     <  1:1281781/101‑1 (MQ=1)
                                                        CGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCG                    <  2:3570229/101‑1 (MQ=1)
                                                          TCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTG                  >  1:1894747/1‑101 (MQ=1)
                                                          TCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTG                  >  1:3764702/1‑101 (MQ=1)
                                                          TCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTG                  >  1:611816/1‑101 (MQ=1)
                                                             AGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGAT               <  1:3818514/101‑1 (MQ=1)
                                                             AGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCGGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGAT               <  2:3673078/101‑1 (MQ=1)
                                                               ATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG             >  1:2833475/1‑101 (MQ=1)
                                                               ATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCG             >  1:1998566/1‑101 (MQ=1)
                                                                TTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGA            <  1:2451083/101‑1 (MQ=1)
                                                                  CAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA          <  1:1148354/101‑1 (MQ=1)
                                                                    GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGGCGCTCCCCCCGCGGGGGCGTGGATCGAAACa        >  1:1970189/1‑100 (MQ=1)
                                                                      CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACacc      <  1:425918/101‑4 (MQ=11)
                                                                      CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACacc      >  1:1236344/1‑98 (MQ=11)
                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaccc     <  1:2735186/101‑5 (MQ=11)
                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaccc     <  2:1078579/101‑5 (MQ=11)
                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaccc     <  1:1525768/101‑5 (MQ=11)
                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaccc     <  1:566754/101‑5 (MQ=11)
                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaccc     <  1:1458442/101‑5 (MQ=11)
                                                                       GCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGGGGGCGCTCCCCCCGCGGGGGCGTGGATCGAAACaccc     >  2:3704961/1‑97 (MQ=2)
                                                                        CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACacccg    <  2:2343588/101‑6 (MQ=11)
                                                                        CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACacccg    <  2:3125093/101‑6 (MQ=11)
                                                                        CTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCCTGGATCGAAACacccg    <  1:3695981/101‑6 (MQ=11)
                                                                         TCCCCCCGCGGGGGCGTAGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACacccgg   <  1:3505597/101‑7 (MQ=2)
                                                                          CCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACacccggc  <  1:3149155/101‑8 (MQ=11)
                                                                          CCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACacccggc  >  1:4105905/1‑94 (MQ=11)
                                                                                                    |||||||||||||||||||||||||||||||||||                                        
AGGTCGCTCCCCCCGCGGGCGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGCACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...........................................................................  >  NC_014034/1397698‑1397797
.......................................................................................................................................GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGTGATG  >  NC_014034/1434877‑1434916

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG