New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1398745	196 (1.050)	2 (0.010)	2/176	30.8	0.01	intergenic (+1049/+849)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
	?	NC_014034	3684751 =	177 (0.840)					coding (955/1260 nt)	RCAP_rcc03475	MiaB family RNA modification enzyme
Rejected: Position hash score below cutoff.

CTTTTGGCCGGCACCCCGATCCCGGGGCCCGGCTCAAAACACGATATCCGCGTGGCGCGGGGGTGGGATCGCCGCCCCGGAGGCGGCGATCAGGGGCGCGAGGTCAGGCCGC....................................................................................................  >  NC_014034/1398634‑1398745 ....................................................................................................AGGTCAGGCCGCAGTCCTCGACCAGCCGCAGGGAGTTTTCGAACATCTCTTCGGTCTCGGTCGGAAAGCCCGCGATGATGTCGGCGCCAAAGACGATGCCGGGGCGCAGCCG  >  NC_014034/3684751‑3684850                                                                                                                                                                                                                                                           AACACGATATCCGCGTGGCGCGGGGGTGGGATCGCCGCCCCGGAGGCGGCGATCAGGGGCGCGAGGTCAGGCCGCAGTCCTCGACCAGCCGCAGGGAGTTT                                                                            >  2:2723184/1‑101 (MQ=255)                                                                            CCCGGAGGCGGCGATCAGGGGCGCGAGGTCAGGCCGCAGTCCTCGACCAGCCGCAGGGAGTTTTCGAACATCTCTTCGGTCTCGGTCGGAAAGCCCGCGAT                                      <  1:2723390/101‑1 (MQ=255)                                                                                                                                                                                                                      CTTTTGGCCGGCACCCCGATCCCGGGGCCCGGCTCAAAACACGATATCCGCGTGGCGCGGGGGTGGGATCGCCGCCCCGGAGGCGGCGATCAGGGGCGCGAGGTCAGGCCGC....................................................................................................  >  NC_014034/1398634‑1398745 ....................................................................................................AGGTCAGGCCGCAGTCCTCGACCAGCCGCAGGGAGTTTTCGAACATCTCTTCGGTCTCGGTCGGAAAGCCCGCGATGATGTCGGCGCCAAAGACGATGCCGGGGCGCAGCCG  >  NC_014034/3684751‑3684850 Base quality scores:  ATCG  < 3 ≤  ATCG  < 30 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 40 ≤  ATCG